TCONS_00058671-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058671-protein
Unique NameTCONS_00058671-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058671-protein ID=TCONS_00058671-protein|Name=TCONS_00058671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp
MFLRTVAANGNRRKSLANTESHGSGRRGSAAAEMERRKSSLNNVVNTSRY
DRRQSAIEGRYLLNRTDTQLFNIPESLSPSLQNIQRRSLSVESGSQTKDQ
VYDIPDWSPYSRTSSLSRPTSYQPLVRVTFRLRGQQPFETFESTLERFPD
TLLGDKLKREQYFDHKLNCYIINRCQHSFSAVLFYYQSDGILSRPLDIDR
ENFIKELEFYEIEECIDARHRQEQKMVEDSNRSKLSPQGKARQFIWKILE
YQERTLLAKFCFYFYLMTSILAIVIFCAETEPQFKSKTFWDPLETAVNVL
FTIEYILRLYSAPSIKGFIFSAFGVVDLFAIVPFYCNVFIRLAGNKAVTS
LSILTLLRVLRVFKLTRCNEGLRILMMTIYESLHHLRSLFVCIGITSLFF
ATLLFFIESDILQISETNNFASIPDSFWYTVITATAVGYGDMYPKTSYGK
LVGSVLASVGLLLFCLPTPMLVNKFVECYYIRMTLTKEIDPQRKAVIKRM
RETFME
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036960XLOC_036960Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058671TCONS_00058671Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR003131T1-type_BTB
IPR005821Ion_trans_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0051260protein homooligomerization
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 169..188
score: 35.26
coord: 385..408
score: 25.3
coord: 252..280
score: 22.32
coord: 420..442
score: 62.57
coord: 449..475
score: 43.38
coord: 292..315
score: 36.98
coord: 318..338
score: 30.44
coord: 356..382
score: 47.84
NoneNo IPR availableGENE3D1.20.5.110coord: 441..477
e-value: 4.4E-10
score: 38.6
NoneNo IPR availableGENE3D1.10.287.70coord: 385..439
e-value: 4.8E-10
score: 38.9
NoneNo IPR availableGENE3D1.20.120.350coord: 256..384
e-value: 2.1E-24
score: 85.3
NoneNo IPR availableGENE3D3.30.710.10coord: 125..227
e-value: 4.2E-13
score: 48.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 258..477
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 137..215
e-value: 2.6E-16
score: 59.6
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 261..478
e-value: 1.7E-28
score: 99.4
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 136..220

Blast
[Close]
BLAST of TCONS_00058671-protein vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 5.645e-67
Identity = 137/394 (34.77%), Postives = 223/394 (56.60%), Query Frame = 0 
Query:  127 RVTFRLRGQQPFETFESTLERFPDTLLGDKLKREQYFDHKLNCYIINRCQHSFSAVLFYYQSDGILSRPLDIDRENFIKELEFYEIEECIDARHRQEQKMVEDSNRSKLSPQGKARQFIWKILEYQERTLLAKFCFYFYLMTSILAIVIFCAETEPQFK--------------------SKTFWDP---LETAVNVLFTIEYILRLYSAPSIKGFIFSAFGVVDLFAIVPFYCNVFIRLA---GNKA---VTSLSIL---TLLRVLRVFKLTRCNEGLRILMMTIYESLHHLRSLFVCIGITSLFFATLLFFIESDILQISETNNFASIPDSFWYTVITATAVGYGDMYPKTSYGKLVGSVLASVGLLLFCLPTPMLVNKFVECYYIRMTLTKE 488
            RV   + G + FET   TL +FP+TLLG+  KR +YFD   N Y  +R + SF A+L+YYQS G L RP+++  + F +E++FYE+ E    + R+++  +++  R    P+ + ++ +W + EY E +  A+      +M  +++IVIFC ET P+ K                    S  F DP   +ET   + F+ E ++R ++ PS   F  +    +D+ AI+P++  +   +A   GN+     TSL+IL    L+RV R+FKL+R ++GL+IL  T+  S+  L  L   + I  + F++ ++F E++       ++F+SIPD+FW+ V++ T VGYGDMYP T  GK+VGS+ A  G+L   LP P++V+ F   +Y R T  +E
Sbjct:   38 RVVINISGLR-FETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPL--PEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAE----EAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNF-NYFYHRETEGEE 423
The following BLAST results are available for this feature:
BLAST of TCONS_00058671-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA15.645e-6734.77Potassium voltage-gated channel subfamily A member... [more]
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