TCONS_00058735-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058735-protein
Unique Name	TCONS_00058735-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1063

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058735-protein ID=TCONS_00058735-protein|Name=TCONS_00058735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1063bp
MESPVKHTGPVFESTISELNSKDNTVTPIMKKTKDYILTPLSESMNDTIG
ADIPVPENEVFEIPKCKIILNRPEYYTRPPIKELNDRVGDGTCLTRDFTV
GREGYGEVTFLGETDVYGLNLDQIVFFRRREAEVYPDDYSNKPEVGEELN
KPSEITLFKVWPNDKSTHTPVKTPDRLKSSGFIEKIEEKTLAMGAVFIDY
RPKEGAWVFKVNHFTKYGIHEQFISEDVDPTTMKMKAQAREQSFMDDIDF
QRDAIKERLKKHIFQKYDEEMYDEDEDKCEEENESESVEKMVDEDDDVID
DRIPTGEQDTTEFYEENYEEELFPMSHQLGHVARVQPFNVQGMKTSVLYD
DEEDYMPSPKTAVKNQQLFSNKSIFSSTYVDSARKQSSIFPKLDTSRQAN
NNNEQNKLNSSLFQPMVNGENNAFERTTKMAKTSHLFKSGLVRPSQEMEQ
EVSTEPEFVKETVFVKCKTFDMVPYEQSLMFSKTHLLADASLTHGREYNT
RWSADWTFVHPSKQVGLSSVEAKKALNPHIFSSSVHQPLPSFGLCDINVH
VERVELKTKEGMKQFIEECLDIALKYTNFDDKEGSNVLNSVTIKSGVEAL
DAYVETADAFKQIADDSDVGNFKVHSDAWQLAAALWGKQETENDNNLYEI
HSARREALSKWLSNVTADQIENEIQTQLQDDGHLSAIFSLLSGRQITKAC
QVARENKEYRLGFLLAQAGGDHHLKHHLRSQLAQWDENNVDSFMNKDRLK
LYVLLSGMMVWKSNKNTINLCQDMDWKRSLAMHLWYYCSSTSTVLDAFTE
YQSSFKGTNTYEPYAVFPSPEYVEDSGSKVKDLCYHLLALYCNRPHCLEK
MLTPQTHTDNSLDYHLSWHLQRVLEDLGYTHMTDERHAFLQYSYASQLES
LGLWYWAVYVLMHLRHDERREFHVREVLQRYCRVNEDDSIDLTEEEDLMV
DKFRVPVEWIHEAKALHAKYAKEYYKEAMLLIRACQWNRAHQVILEHLAA
DSIIEDDHDTLRELLQDISLPERVCTVKNWRTGXRFPSVQLRVSVGKSWS
VVLGGLCSHAPPP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036997	XLOC_036997	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058735	TCONS_00058735	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007230	Peptidase_S59
IPR021967	Nup96

Vocabulary: **Cellular Component**
Term	Definition
GO:0005643	nuclear pore

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0005643	nuclear pore

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007230	Peptidase S59, nucleoporin	GENE3D	3.30.1610.10		coord: 63..223 e-value: 2.4E-49 score: 166.5
IPR007230	Peptidase S59, nucleoporin	PFAM	PF04096	Nucleoporin2	coord: 74..214 e-value: 1.5E-40 score: 138.4
IPR007230	Peptidase S59, nucleoporin	PROSITE	PS51434	NUP_C	coord: 72..214 score: 47.154
IPR007230	Peptidase S59, nucleoporin	SUPERFAMILY	82215	C-terminal autoproteolytic domain of nucleoporin nup98	coord: 66..220
IPR021967	Nuclear protein 96	PFAM	PF12110	Nup96	coord: 686..967 e-value: 5.6E-88 score: 294.7

Blast

[Close]

BLAST of TCONS_00058735-protein vs. Swiss-Prot (Human)
Match: NUP98 (Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98 PE=1 SV=4)

HSP 1 Score: 511.916 bits (1317), Expect = 7.224e-158
Identity = 333/1018 (32.71%), Postives = 527/1018 (51.77%), Query Frame = 0

Query:   57 ENEVFEIPKCKIILNRPEYYTRPPIKELNDRVGD-GTCLTRDFTVGREGYGEVTFLGETDVYGLNLDQIVFFRRREAEVYPDDYSNKPEVGEELNKPSEITLFKVWPNDKSTHTPVKTPDRLKSSGFIEKIEEKTLAMGAVFIDYRPKEGAWVFKVNHFTKYGIHEQFISEDVDPTTMKMKAQAREQSFMDDIDFQRDAIKERLKKHIFQKYDEEMYDEDEDKCEEENESESVEKMVDEDDDVIDDRIPTGEQDTTEFYEENYEEELFPMSHQLGHVAR---VQPFNVQGMKTSVLYDDEEDYMPS-------PKTAVKNQQLFSNKSIFSSTYVDSARKQSSIFPKLDTSRQANNNNEQNKLNSSLF-QPMVNGENNAFERTTKMAKTSHLFKSGLVRPSQEMEQEVSTEPEFVKETVFVKCKTFDMVPYEQSLMFSKTHLLADASLTHGREYNTRWSADWTFVHPSKQVGLS----------SVEAKKALNPHIFSSSVHQPLPSFGLCDINVHVERVELKTK---EGMKQFIEECLDIALKYTNFDDKEGSNVLNSVTIKSGVEALDAYVETADAFKQIADDSDVGNFKVH-SDAWQLAAALWGKQETENDNNLYEIHS-----ARREALSKWLSNVTADQIENEIQTQLQDDGHLSAIFSLLSGRQITKACQVARENKEYRLGFLLAQAGGDHHLKHHLRSQLAQWDENNVDSFMNKDRLKLYVLLSGMMVWK-SNKNTINLCQDMDWKRSLAMHLWYYCSSTSTVLDAFTEYQSSFKGTNTYEPYAVFPSPEYVEDSG----------SKVKDLCYHLLALYCNRPHCLEKMLTPQTHTDNSLDYHLSWHLQRVLEDLGYTHMTDERHAFLQYSYASQLESLGLWYWAVYVLMHLRHDERREFHVREVLQRYCRVNEDDSIDLTEEEDLMVDKFRVPVEWIHEAKALHAKYAKEYYKEAMLLIRACQWNRAHQVILEHLAADSIIEDDHDTLRELLQDISLPERVCTVKNWRT 1032
            EN  + +    IIL +  YYT P + +L     + G C+  DFT+GR+GYG + F G+ ++  LNLD IV  RR+E  VY DD + KP VGE LN+ +E+TL  VWP DK++   +K+PDRL    +  ++E  +   GA F +YRP+ G+WVFKV+HF+KYG+ +    E+  P+    K        +        +    L+  +  K              +  E E + ++V+ D D++D    T E       EE+  E+  P+S    H+A    + P  +Q MK S+L D+E+  M         P  A  +Q++ S +   S+++  S++ +S +   L           Q+K  S  F  P V+ +     R   +          +  P   +    S  PE   +TV  + +   +VP E+S+ + K  LL D +L  GR +   W  +WT  +  +Q+  S          S+E     NP         P          VH+E++ L+ +   E MK + +  L++ LK++     E   +   +    GV  +  Y   AD  K+ + D        H S  W L  ALWG  + E D+ L E         RR A S+WLS     QIE E+ +  Q +  + A+FS L+G++I++AC +A+++ ++RL  LL+Q  G   ++  L  QL  W +   DSF+  +RL+++ LL+G  VW+ S K  IN+C  +DWKRSLA+HLWY    T+++  A + Y+ +F+ T+  + YA  P P Y+E SG          + ++D+C+HLL LY +R + L ++L P++ T + LDY LSWHL  VL  L YTH++ +    LQ SYA QLES GLW WA++VL+H+ +   RE  VRE+L R+C++ E  + +   +E  +  K RVP +WIHEAKA+ A    + + EA+ L +A  WNR H++I+ HLA+D+II +++D L+  L+D++ PER   +++W T
Sbjct:  723 ENNSYHMHPAGIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDD-NQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHPSKTSTKK-------LKTAPLPPASQTTPLQMALNGKPAPPPQ-------SQSPEVEQLGRVVELDSDMVDI---TQEPVLDTMLEESMPEDQEPVSAST-HIASSLGINPHVLQIMKASLLTDEEDVDMALDQRFSRLPSKADTSQEICSPRLPISASH--SSKTRSLVGGLL-----------QSKFTSGAFLSPSVSVQECRTPRAASLMNIPSTSSWSVPPPLTSVFTMPSPAPEVPLKTVGTR-RQLGLVPREKSVTYGKGKLLMDMALFMGRSFRVGWGPNWTLANSGEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPF--------KVHLEKLSLRQRKPDEDMKLY-QTPLELKLKHSTVHVDE---LCPLIVPNLGVAVIHDY---ADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLK-ELDSQLNEPREYIQILERRRAFSRWLSCTATPQIEEEV-SLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLE--TPESWAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWET 1688

The following BLAST results are available for this feature:

BLAST of TCONS_00058735-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058735-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NUP98	7.224e-158	32.71	Nuclear pore complex protein Nup98-Nup96 OS=Homo s...	[more]

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TCONS_00058735-protein (polypeptide) - C. hemisphaerica