TCONS_00058747-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058747-protein
Unique NameTCONS_00058747-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058747-protein ID=TCONS_00058747-protein|Name=TCONS_00058747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=853bp
MFLQLLGAFIFGIVAVLVVELIVLYKWFQRQPNEDLKELPSYTPVTNPKD
LANFCKLDGATDKESCMFLNLIFQFLWREWRDSPKTRNFFIRKMNMEFQE
MLLNKAAGKIMEQITVRDYYLGDSLPEFKSATIMKIDNKNHSQVPQEIDL
AVDIDYSGGFVISLDVDLIFGRTASLSIKLNKLVGRVRLQYTRNPCTHWS
FSFYEDPIMDLHVDSNFEGKKLPKLTSFIHNQIRKSIKKKHTLPRYKVRY
KPFFVKEEPQDGRNEVFIHNSLVTMGKLDLEIVECTRIQKLPKGSHIYCS
LSLDILPWKEDMPMKRSMWPVHEVLMSKMKSGSLGVSFGAVKDRNTESDN
IELITINTIFPNSPATQVDIQKGDILISVNDVDITNMKQVKRLIKNTGDQ
FTFKLQRPPASELMDTMNHETTTNGNSMSGSTESQLKESNDRIDGGGGSM
KNGMMGGNGRDSQSQQDDEFNYDSFILQEDDSDQEEFVNIVCNEFAQDIS
NDQAEILRQEVQTIQRASLIPHSDDSSLDVVDRSTPIPAINIQNTEPSRR
DSLNNEKRNTDSPLPSKRSFSFFKRRRTESASTLNRRRTSDTSLLNHPRR
DANRFESSLNFEPNTTPQHNKKKEVRISEPAQMNGDDNDQETTHRTTRRK
MSDNMTKEWDNISQHNIEIFRPDTSALEEEKEPTGQRTSHQNANKELVWN
EIFSFDIEKEHRFLNICVWCKHEESFEKDVLIGYVSIPLMELAVECLSTS
ARKSIRKFHLTAASSRSTISRTYLRTVMPGMNLSCCHGDITIAYRHFIST
PESQLPEEDRVDSASLSSKKKVIFSFVVKVCSEKNWHFDTLLLXEKGYLF
VRC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037004XLOC_037004Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058747TCONS_00058747Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR000008C2_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 332..409
e-value: 7.6E-11
score: 52.0
IPR001478PDZ domainPFAMPF00595PDZcoord: 325..399
e-value: 1.3E-8
score: 34.9
IPR001478PDZ domainPROSITEPS50106PDZcoord: 323..409
score: 15.441
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 316..410
IPR000008C2 domainGENE3D2.60.40.150coord: 524..776
e-value: 1.3E-11
score: 44.0
IPR000008C2 domainPFAMPF00168C2coord: 687..742
e-value: 1.6E-5
score: 25.0
IPR000008C2 domainSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 685..745
NoneNo IPR availableGENE3D2.30.42.10coord: 320..435
e-value: 1.4E-15
score: 56.9
NoneNo IPR availableCDDcd00030C2coord: 686..742
e-value: 8.47987E-6
score: 43.9799
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 321..406
e-value: 2.76086E-12
score: 62.9694

Blast
[Close]
BLAST of TCONS_00058747-protein vs. Swiss-Prot (Human)
Match: PDZD8 (PDZ domain-containing protein 8 OS=Homo sapiens GN=PDZD8 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 3.077e-74
Identity = 133/365 (36.44%), Postives = 225/365 (61.64%), Query Frame = 0 
Query:   63 KESCMFLNLIFQFLWREWRDSPKTRNFFIRKMNMEFQEMLLNKAAGKIMEQITVRDYYLGDSLPEFKSATIMKI-------------DNKNHSQVPQEIDLAVDIDYSGGFVISLDVDLIFGRTASLSIKLNKLVGRVRLQYTRNPCTHWSFSFYEDPIMDLHVDSNFEGKKLPKLTSFIHNQIRKSIKKKHTLPRYKVRYKPFFVKEEPQ---DGRNEVFIHNSLVTMGKLDLEIVECTRI---QKLPKGSHIYCSLSLDILPWKEDMPMKRSMWPVHEVLMSKMKSGSLGVSFGAVKDRNTESDNIELITINTIFPNSPATQVDIQKGDILISVNDVDITNMKQVKRLIKNTGDQFTFKLQRP 408
            +E+C FLN    FL+RE RD+  TR +  +K+ +EF+E+L  K AG+++E +++RD +LG+++P  K+  +++                   +  P+E+    +++Y+GGF +++DVDL+FG++A L +KL+++VGR+RL +TR P THW FSF EDP++D  V S FEG+ +P+LTS I NQ++K IK+KHTLP YK+R+KPFF  +  Q   +    + I    +T G+L + ++EC+R+       + ++++C+L L    W+E    +RS     E++   ++  S+G++   V+  +  + +   + I T+ PNSPA   D+Q+GD LI++  V IT+  QV +LIK  GD+     +RP
Sbjct:   92 RETCYFLNATILFLFRELRDTALTRRWVTKKIKVEFEELLQTKTAGRLLEGLSLRDVFLGETVPFIKTIRLVRPVVPSATGEPDGPEGEALPAACPEELAFEAEVEYNGGFHLAIDVDLVFGKSAYLFVKLSRVVGRLRLVFTRVPFTHWFFSFVEDPLIDFEVRSQFEGRPMPQLTSIIVNQLKKIIKRKHTLPNYKIRFKPFFPYQTLQGFEEDEEHIHIQQWALTEGRLKVTLLECSRLLIFGSYDREANVHCTLELSSSVWEEK---QRSSIKTVELIKGNLQ--SVGLTLRLVQSTDGYAGH---VIIETVAPNSPAAIADLQRGDRLIAIGGVKITSTLQVLKLIKQAGDRVLVYYERP 448
The following BLAST results are available for this feature:
BLAST of TCONS_00058747-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDZD83.077e-7436.44PDZ domain-containing protein 8 OS=Homo sapiens GN... [more]
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