TCONS_00058906-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058906-protein
Unique Name	TCONS_00058906-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	872

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058906-protein ID=TCONS_00058906-protein|Name=TCONS_00058906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=872bp
MDLPSTTASGGRSSPLSTKTFLTDLDDLDVERERMPYVESFALSPNLFEE
YKKNICKEFLEHLQLWEEDSKTKAESIMMAKIEETNNELDLRLHLHDPRP
GRAEKDVHDVRLTELTAHQDRVDQHCAGVLEALESIKRSYQDMSFGHLQE
NDKFRKSVEELEVSFTAASNTHELKAMQEEVHGKLDQFNEIIRASIRQFR
NTLDTTLNKLRGSNAQFRKSLKIFSVGGNFSPEEVDEFRKRLERMASKID
HCEGNVTGELEGLENKRLEVAKENAGKLEDRFKHHLFDMTFIEKIKRWLT
NIQVKIKAEVANSNSQGQHLSKMISVFNTKLKLIKNPQVDSEKFTASEAY
ETLIPILKEFRSRVIYLNCAVKKERVVVVIPTTVDTLVKTTLEKQREKAA
MRGARNKRLPLQQKSSKLGGKGKKTSNLAQMAQLVQGGALSAASKQVLTA
TPKTAVASKSPLPPPPSETPSSATNDGGETAPSTPAPPKPTTAGYSMRRN
SGVRTSLGGKYDKKYLAFGDPSQEPEKSDKHFLALQIKILQSGLDGLLSS
AEHYYRQKGTRHPTRPKVINDTFDLCAESVIGRLRKYKTQTESYHNDCIQ
EFRAQIKLFNGIMIELPSLLMISLVTKHQNTRSNAQKDISNTLKSKIEIS
ERLKKEHQTLLRPTLGHPNNKPELDKLKSSEKSRQKESEKSLDDYQKLML
DCINMSVRSFVIELNEKVNTLLSQFDVALTLDEVIIGDPKMKPKAEKELL
RENQKQRKQEESEKQNQQQNLSKNEDQFETPTPHYWPKLDTSSLIESGIL
KATDFLTIPNSMKQTEAHKAVIKARDEEFQHFLDNQSLEREELKKSCDVI
RNENERWKNNWKTSIKKITQLY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037098	XLOC_037098	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058906	TCONS_00058906	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027914	DUF4456

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 744..777
None	No IPR available	COILS	Coil	Coil	coord: 235..255
None	No IPR available	COILS	Coil	Coil	coord: 833..860
None	No IPR available	GENE3D	1.20.120.20		coord: 113..315 e-value: 0.0018 score: 17.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 399..424
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 658..691
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 452..506
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 745..783
IPR027914	Domain of unknown function DUF4456	PFAM	PF14644	DUF4456	coord: 547..751 e-value: 1.1E-51 score: 175.4

Blast

[Close]

BLAST of TCONS_00058906-protein vs. Swiss-Prot (Human)
Match: CC180 (Coiled-coil domain-containing protein 180 OS=Homo sapiens GN=CCDC180 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.941e-53
Identity = 181/666 (27.18%), Postives = 317/666 (47.60%), Query Frame = 0

Query:  222 KIFSVGGNFSPEEVDEFRKRLERMASKIDHCEGNVTGELEGLENKRLEVAKENAGKLEDRFKHHLFDMTFIEKIKRWLTNIQVKIKAEVANSNSQGQHLSKMISVFNTKLKLIKNPQVDSEKFTASEAYETLIPILKEFRSRVIYLNCAVKKERVVVVIPTTVDTLVKTTLEKQREKAAMRGARNKRLPLQQKSSKLGGKGKKTSNLAQMAQ-LVQGGALSAASKQVLTATPKTAVASKSPLPPPPSETP-----SSATNDGGETAPSTPAPPKPTTAGYSMRRNSGVRTSLG-----GKYDKKYLAFGDPSQEPEKSDKHFLALQIKILQSGLDGLLSSAEHYYRQKGTRHPTRPKVINDTFDLCAESVIGRLRKYKTQTESYHNDCIQEFRAQIKLFNGIMIELPSLLMISLVTKHQNTRSNAQKDISNTLKSKIEISERLKKEHQTLLRPTLGHPNNKPELDKLKSSEKSRQKESEKSLDDYQKLMLDCINMSVRSFVIELNEKVNTLLSQFDVALTLDEVIIGDPKMKPKAEK---ELLRENQKQRKQEESEKQNQQQNLSKNEDQFETPTPHYWPKLD-TSSLIESGILKATDFLTIPNSMKQTEAHKAVIKARDEEFQHFLDNQSLEREELKKSCDVIRNENERWKNNWKTSIKKITQLY 872
            ++FS GGNFSP+E++    RLE+ A++I+  E  +   +E LEN+ L+ A +   K E +F +   D+ FIEKI+R LTN+QVKIK +VA SNSQ   L+  +     K+K  +  + +    T  E    +    ++   R+ YLNC++ +      +  T      T L+ Q E + +  +      L++++       +  + L+++ + L++  A+    K  L   P T   +       PS+T          N G +  PS  A    T+AG     +  +  S        K ++KY   GD   +P  + + F  + + +L    + LL+ AE +YR K  R  TRP  + DTFD CAE++  ++ +Y++Q   YHN C+ E R QI+ F  ++ ++  L+M +    H      + K+I    + + +  E+ K ++   L   LGHP +  E++ L  SE+ RQ+E +  +   ++ + +C   + + F+  L       L Q D  +T+D+V +   +M+P  +K    + R+      +EESEK   ++   K            WP +  T   I++ IL      +  ++ K T  H A ++ARD  +  +L +   E + ++  C     E +RWK++WK S+  I  LY
Sbjct: 1016 QLFSEGGNFSPKEINSLCSRLEKEAARIELVESVIMLNMEKLENEYLDQANDVINKFESKFHNLSVDLIFIEKIQRLLTNLQVKIKCQVAKSNSQTNGLNFSLQQLQNKIKTCQESRGEKTTVTTEELLSFVQTWKEKLSQRIQYLNCSLDR------VSMTELVFTNTILKDQEEDSDILTSSE---ALEEEAKLDVVTPESFTQLSRVGKPLIEDPAVDVIRK--LLQLPNTKWPTHH-CDKDPSQTGFKRHRCQPENSGKKAVPSASA----TSAGSLQTTHPPLSHSFTPHPKPNKMERKYRVLGD---KPPPAAEDFKGIILTLLWESSENLLTVAEEFYR-KEKRPVTRPDCMCDTFDQCAENISKKILEYQSQANKYHNSCLIELRIQIRRFEELLPQVCWLVMENFKEHHWKKFFTSVKEIRGQFEEQQKRLEKRKDKNAQKLHLNLGHPVHFQEMESLHLSEEERQEELDSMIRMNKEKLEECTRRNGQVFITNLATFTEKFLLQLDEVVTIDDVQVA--RMEPPKQKLSMLIRRKLAGLSLKEESEKPLIERGSRK------------WPGIKPTEVTIQNKILLQPT--SSISTTKTTLGHLAAVEARDAVYLKYLASFEEELKRIQDDCTSQIKEAQRWKDSWKQSLHTIQGLY 1645

The following BLAST results are available for this feature:

BLAST of TCONS_00058906-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058906-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CC180	1.941e-53	27.18	Coiled-coil domain-containing protein 180 OS=Homo ...	[more]

You are here

TCONS_00058906-protein (polypeptide) - C. hemisphaerica