Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00058918-protein ID=TCONS_00058918-protein|Name=TCONS_00058918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp ARQRCTKRNRKTLKVVGILLDDNMFTLPVQKKQLTGELVCGERQYLCLIP KDGAKSWEKHCCAGFMIDAALEMFQEVGFDWELYAVPDSKFGAYSNCTDV EDHSTCQWNGVVRELKEGRADVAITGLTITHPRLQVIDFTEEIFLTRLGM ALGNRPKKLKFLNWKFIESIDSNLMIALVIILPVFCYTTYMMEKITSKFD DSSTSNPYTLENSFTYGAGLTFQRDLVGKTPIYWSARLLSICYAVALMII MSTYTANLTASTVLSDRYANFKGMYD Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0005234 extracellular-glutamate-gated ion channel activity
GO:0004970 ionotropic glutamate receptor activity
Vocabulary: Cellular Component
Term Definition
GO:0016020 membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
cellular_component
GO:0016020
membrane
molecular_function
GO:0005234
extracellular-glutamate-gated ion channel activity
molecular_function
GO:0004970
ionotropic glutamate receptor activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
20 40 60 80 100 120 140 160 180 200 220 240 260 Expect = 3.3E-8 / Score = 32.6 Expect = 1.3E-19 / Score = 69.6 Score = Expect = 2.4E-18 / Score = 66.3 Expect = 3.2E-11 / Score = 43.2 Sequence G3DSA:1.10.287.70 G3DSA:3.40.190.10 SSF53850 PF10613 PF00060
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available GENE3D 1.10.287.70 coord: 169..276 e-value: 3.3E-8 score: 32.6
None No IPR available GENE3D 3.40.190.10 coord: 8..168 e-value: 1.3E-19 score: 69.6
None No IPR available SUPERFAMILY 53850 Periplasmic binding protein-like II coord: 58..165
IPR019594 Ionotropic glutamate receptor, L-glutamate and glycine-binding domain PFAM PF10613 Lig_chan-Glu_bd coord: 55..143 e-value: 2.4E-18 score: 66.3
IPR001320 Ionotropic glutamate receptor PFAM PF00060 Lig_chan coord: 182..274 e-value: 3.2E-11 score: 43.2
Blast
BLAST of TCONS_00058918-protein vs. Swiss-Prot (Human)
Match:
NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)
HSP 1 Score: 95.9005 bits (237), Expect = 3.172e-22
Identity = 66/220 (30.00%), Postives = 100/220 (45.45%), Query Frame = 0
Query: 59 KHCCAGFMIDAALEMFQEVGFDWELYAVPDSKFGAYSNCTDVEDHSTCQWNGVVRELKEGRADVAITGLTITHPRLQVIDFTEEIFLTRLGMALGNR--PKKLKFLNWKFIESIDSNLMIALVIILPVFCYTTYMMEKITSKFDDSSTSNPYTLENSFTYGAGLTFQRDLVGKTPIYWSARLLSICYAVALMIIMSTYTANLTASTVLSDRYANFKGMYD 276
K CC G+ ID ++ +++ FD++LY V D K+GA+ N W G+V +L G A +A+T +I R QVIDFT F T LG+ + R + W ++ + +AL I VF + S ++ ++ L F R + K P W+ R L +A+ M +STYTANL A V Y G++D
Sbjct: 573 KKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNG---------HWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAFMWPLHWTMWLGIFVALHITA-VFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHD 782
The following BLAST results are available for this feature:
BLAST of TCONS_00058918-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
A R Q R C T K R N R K T L K V V G I L L D D N M F T L P V Q K K Q L T G E L V C G E R Q Y L C L I P K D G A K S W E K H C C A G F M I D A A L E M F Q E V G F D W E L Y A V P D S K F G A Y S N C T D V E D H S T C Q W N G V V R E L K E G R A D V A I T G L T I T H P R L Q V I D F T E E I F L T R L G M A L G N R P K K L K F L N W K F I E S I D S N L M I A L V I I L P V F C Y T T Y M M E K I T S K F D D S S T S N P Y T L E N S F T Y G A G L T F Q R D L V G K T P I Y W S A R L L S I C Y A V A L M I I M S T Y T A N L T A S T V L S D R Y A N F K G M Y D 20 40 60 80 100 120 140 160 180 200 220 240 260 Expect = 3.17e-22 / Id = 30.00 Sequence NMD3A
Match Name E-value Identity Description
NMD3A 3.172e-22 30.00 Glutamate receptor ionotropic, NMDA 3A OS=Homo sap... [more]
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