TCONS_00059160-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059160-protein
Unique NameTCONS_00059160-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059160-protein ID=TCONS_00059160-protein|Name=TCONS_00059160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MTEIQCIVVQKHHRNLLGNKGKYVQDISAKFSVQIKFPDRRKAEDPPLDE
APPEGEVNKNDIIIILGRKDNAENAKAALMELIPVSKEVMIPFDNHRFII
GQKGAGIRKLMDDHDVNINVPPPERKEEIIIVTGPIANVEKAIIALNVRN
DEIESGNEDRRLRQFELILDVPHRHHPKLIGRKGAVIQKLRDDFGVMINV
PSPKTPTEDDKADQIKLIGYEDRCVKAKAAIDEMIRELEEQMVMEIEIDS
RIHNRIIGPRGKSVRKLMDQFKVDIRFPKGEKDKCVVTGLEENCEACKEH
LQMLEEEYMEEVNERAQERDMMDAYMAPRRGGGGNARGGNDLFGYVVKDA
PWNGSAQNGKSAPAPENPKSVSVPDAGNESEFPDLGLKAASNGQGKAWGP
WGNH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037257XLOC_037257Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059160TCONS_00059160Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 287..321
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 354..404
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 241..301
score: 11.825
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 84..146
score: 14.173
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 1..79
score: 10.169
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 164..231
score: 12.999
NoneNo IPR availableCDDcd02394vigilin_like_KHcoord: 3..80
e-value: 6.11185E-10
score: 54.0549
NoneNo IPR availableCDDcd02394vigilin_like_KHcoord: 243..302
e-value: 1.10376E-15
score: 70.2333
NoneNo IPR availableCDDcd02394vigilin_like_KHcoord: 169..231
e-value: 4.1225E-14
score: 65.6109
NoneNo IPR availableCDDcd02394vigilin_like_KHcoord: 86..146
e-value: 7.68407E-19
score: 78.7076
IPR004087K Homology domainSMARTSM00322kh_6coord: 85..151
e-value: 1.7E-7
score: 40.9
coord: 163..236
e-value: 1.3E-12
score: 57.9
coord: 2..84
e-value: 3.9E-6
score: 36.4
coord: 240..306
e-value: 1.1E-12
score: 58.2
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 161..235
e-value: 1.1E-17
score: 62.9
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 236..318
e-value: 1.7E-14
score: 52.8
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 85..160
e-value: 7.9E-14
score: 50.6
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 244..302
e-value: 8.2E-12
score: 44.7
coord: 87..145
e-value: 6.8E-12
score: 44.9
coord: 10..81
e-value: 6.4E-8
score: 32.2
coord: 169..232
e-value: 4.1E-13
score: 48.9
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 1..84
e-value: 4.6E-12
score: 45.0
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 164..242
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 84..156
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 3..83
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 237..309

Blast
BLAST of TCONS_00059160-protein vs. Swiss-Prot (Human)
Match: VIGLN (Vigilin OS=Homo sapiens GN=HDLBP PE=1 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.090e-87
Identity = 173/416 (41.59%), Postives = 244/416 (58.65%), Query Frame = 0
Query:    4 IQCIVVQKHHRNLLGNKGKYVQDISAKFSVQIKFPDRRK----AEDPPLDEAPPE------------GEVNKNDIIIILGRKDNAENAKAALMELIPVSKEVMIPFDNHRFIIGQKGAGIRKLMDDHDVNINVPPPERKEEIIIVTGPIANVEKAIIALNVRNDEIESGNEDRRLRQFELILDVPHRHHPKLIGRKGAVIQKLRDDFGVMINVPSPKTPTEDDKADQIKLIGYEDRCVKAKAAIDEMIRELEEQMVMEIEIDSRIHNRIIGPRGKSVRKLMDQFKVDIRFPK-GEKD-KCV-VTGLEENCEACKEHLQMLEEEYMEEVNERAQERDMMDAYMAPRRGGGGNARGGNDLFGYVVKDAPWNGSAQNGKSAPAPENPKSVSVPDAGNESEFPDLGLKAASNGQGKAWGP 400
            ++C + QK HR+++G KG  +Q I+  FSVQIKFPDR +    + +P + E   E            G   + DIIII GRK+  E AK AL  L+PV+ EV +PFD HR++IGQKG+GIRK+MD+ +VNI+VP PE + +II +TG  AN+++A   L  R  E+++  EDR LR F+L + V  ++HPK+IGRKGAVI ++R +  V  N+  P     +   DQI + GYE     A+ AI  ++ ELE+ +  ++ +D R+H RIIG RGK++RK+MD+FKVDIRFP+ G  D  CV VTGL EN E   +H+  LEEEY+ +V     + + +  YM P       A       G+VV+DAPW  S+             S   PD  +  EFP  G + A   +   WGP
Sbjct:  876 LECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDREENAVHSTEPVVQENGDEAGEGREAKDCDPGSPRRCDIIIISGRKEKCEAAKEALEALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDV--NIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLADV----VDSEALQVYMKPPAHEEAKAPSR----GFVVRDAPWTASS-------------SEKAPDMSSSEEFPSFGAQVAP--KTLPWGP 1266          

HSP 2 Score: 106.301 bits (264), Expect = 1.336e-24
Identity = 87/317 (27.44%), Postives = 156/317 (49.21%), Query Frame = 0
Query:    1 MTEIQCIVVQKHHRNLLGNKGKYVQDISAKFSVQIKFPDRRKAEDPPLDEAPPEGEVNKNDIIIILGRKDNAENAKAALMELIPV-----SKEVMIPFDNHRFIIGQKGAGIRKLMDDH-DVNINVPPPERKEEIIIVTGPIANVEKAIIALN-VRNDEIESGNEDRRLRQFELILDVPHRHHPKLIGRKGAVIQKLRDDFGVMINVPSPKTPTEDDKADQIKLIGYEDRCVKAKAAIDEMIRELEEQMVMEIEIDSRIHNRIIGPRGKSVRKLMDQF-KVDIRFP--KGEKDKCVVTGLEENCEACKEHLQMLEEE 307
            M  ++  +  K HR+L+G  G  +  I  ++ V ++ P              P+ E  K+++I I G     + AK  L+EL        +K+++I    HR IIGQKG  IR++ D   +V IN P P +K +I+ + GP   VEK    +  +  D +E+         + + + +  + H  +IG+ GA I+K+R++    I++P+     E+  ++ I + G    C  A++ I  + ++L     +E+ I +++HN +IG +G+ +R +M++   V I FP      D  V+ G   + E  K+ L  L EE
Sbjct:  435 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIP--------------PDSE--KSNLIRIEGDPQGVQQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSDIVQLRGPKNEVEKCTKYMQKMVADLVENS--------YSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPA-----ENSNSETIIITGKRANCEAARSRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEE 722          

HSP 3 Score: 103.99 bits (258), Expect = 6.433e-24
Identity = 87/347 (25.07%), Postives = 153/347 (44.09%), Query Frame = 0
Query:    1 MTEIQCIVVQKHHRNLLGNKGKYVQDISAKFS-VQIKFPDRRKAEDPPLDEAPPEGEVNKNDIIIILGRKDNAENAKAALMELIPVSKEVMIPFD------NHRFIIGQKGAGIRKLMDDHDVNINVPPPERKEE-IIIVTGPIANVEKAIIALNVRNDEIESGNEDRRLRQFELILDVPHRHHPKLIGRKGAVIQKLRDDFG-VMINVPSPKTPTEDDKADQIKLIGYEDRCVKAKAAIDEMIRELEEQMVMEIEIDSRIHNRIIGPRGKSVRKLMDQFKVDIRFPKGEK----------------------------------DKCVVTGLEENCEACKEHLQML 304
            + E++  +  K H +L+G KG+ ++ I  +   V I FP                 E + +D ++I G   + E AK  L+ L    +      D       H+F+IG+ G  IRK+ D     +  P  E K++ +I + G    V +A   L      +++  ED  L        V  +HH   + R+G V++++ +++G VM++ P   T     ++D++ L G +D    AK  I E+I +LE Q+ +E  I  + H  ++GP+G  ++++   F V I+FP  E+                                  D  +++G +E CEA KE L+ L
Sbjct:  653 IAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFP----------------VEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARVIFPAAEDKDQDLITIIGKEDAVREAQKELEALIQNLDNVVEDSML--------VDPKHHRHFVIRRGQVLREIAEEYGGVMVSFPRSGT-----QSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTLECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDREENAVHSTEPVVQENGDEAGEGREAKDCDPGSPRRCDIIIISGRKEKCEAAKEALEAL 970          

HSP 4 Score: 88.5817 bits (218), Expect = 9.046e-19
Identity = 81/313 (25.88%), Postives = 145/313 (46.33%), Query Frame = 0
Query:    2 TEIQCIVVQKHHRNLLGNKGKYVQDISAKFSVQIKFPDRRKAEDPPLDEAPPEGEVNKNDIIIILGRKDNAENAKAALMELIPVSKEVMIPFDNHRFIIGQKGAGIRKLMDDH-DVNINVPPPERKEEIIIVTGPIANVEKAIIALNVRNDEIESGNEDRRLRQFELILDVPHRHHPKLIGRKGAVIQKLRDDFGVMINVPSPKTPTEDDKADQIKLIGYEDRCVKAKAAIDEMIRELEEQMVMEIEIDSRIHNRIIGPRGKSVRKLMDQF-KVDIRF--PKGEKDKCVVTGLEENCEACKEHLQMLEEEYME 310
            T I   V +  H+ ++G KG  +Q+I  +  V ++ P      +  +    PE           LG+      AKA    +      V  P   HRFIIG+KG  + K+      V+I     E K   I + GP  +V       NV  ++IE   +D   R   + +++ H+ H  LIG+ GA I +++D + V + +P      + +K++ I++ G      +AK  + E+   +E +   ++ I+ R H  IIG +G+ +R++ D+F +V I F  P  + D   + G +   E C +++Q +  + +E
Sbjct:  296 TTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISETVILRGEPEK----------LGQALTEVYAKANSFTV----SSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDK---ITLEGPTEDV-------NVAQEQIEGMVKDLINRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPP-----DSEKSNLIRIEGDPQGVQQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSDIVQLRGPKNEVEKCTKYMQKMVADLVE 579          
The following BLAST results are available for this feature:
BLAST of TCONS_00059160-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VIGLN1.090e-8741.59Vigilin OS=Homo sapiens GN=HDLBP PE=1 SV=2[more]
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