TCONS_00059226-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059226-protein
Unique NameTCONS_00059226-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length128

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059226-protein ID=TCONS_00059226-protein|Name=TCONS_00059226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MVDEEINPKAYPLADATLTVTILDLIQQAANYKQLLKGANESTKALNRGI
AEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVKSKQALGRATGVSRPVI
ACAVTINEGSQLKSQIQSLQNAIEKLLL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037300XLOC_037300Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059226TCONS_00059226Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018492Ribosomal_L7Ae/L8/Nhp2
IPR002415H/ACA_rnp_Nhp2_euk
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
IPR004037Ribosomal_L7Ae_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005730 nucleolus
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 109..128
IPR018492Ribosomal protein L7Ae/L8/Nhp2 familyPRINTSPR00881L7ARS6FAMILYcoord: 35..49
score: 43.64
coord: 54..67
score: 44.48
coord: 70..80
score: 66.53
coord: 80..94
score: 51.82
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryotePRINTSPR00883NUCLEARHMGcoord: 8..21
score: 62.86
coord: 38..48
score: 74.55
coord: 21..36
score: 55.0
coord: 82..94
score: 72.31
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 23..111
e-value: 1.7E-26
score: 91.7
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 3..128
e-value: 5.6E-47
score: 158.2
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 6..126
IPR004037Ribosomal protein L7Ae conserved sitePROSITEPS01082RIBOSOMAL_L7AEcoord: 73..90

Blast
[Close]
BLAST of TCONS_00059226-protein vs. Swiss-Prot (Human)
Match: NH2L1 (NHP2-like protein 1 OS=Homo sapiens GN=SNU13 PE=1 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 4.947e-68
Identity = 101/128 (78.91%), Postives = 116/128 (90.62%), Query Frame = 0 
Query:    1 MVDEEINPKAYPLADATLTVTILDLIQQAANYKQLLKGANESTKALNRGIAEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVKSKQALGRATGVSRPVIACAVTINEGSQLKSQIQSLQNAIEKLLL 128
            M + ++NPKAYPLADA LT  +LDL+QQ+ NYKQL KGANE+TK LNRGI+EFIVMAADAEPLEI+LHLPLLCEDKNVPYVFV+SKQALGRA GVSRPVIAC+VTI EGSQLK QIQS+Q +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
The following BLAST results are available for this feature:
BLAST of TCONS_00059226-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NH2L14.947e-6878.91NHP2-like protein 1 OS=Homo sapiens GN=SNU13 PE=1 ... [more]
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