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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00059336-protein ID=TCONS_00059336-protein|Name=TCONS_00059336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=679bp
MSMKRLKGKFRLSSTTSLPATVVLDEWTKYDERLIDAAYKSDRERIKETI
RKKGASPVKVSRDGQTALHISVKKGMLDCVEFMLAENPDLSTIDLQGRTV
YHIAASKGDPVMLKKLLDYSRWCLEVKDTKEMTALHYAVASGENECVKLL
INNNSPVDLRDGEGRTPLLTAIMNGYEKIAMTLVLHGVDVNAPDYKERTP
IFMACIQGMRDVVALLISKGADSKLVDAEGKTLEQIAGEAGHVEIVDILR
NSADSGIMDIEHMHENDENEEEEELHENGDVDETDHDIQEEQSTEMNDKE
NKRHSSTSSSSAQNYILEVKPTLRSPTDRVRTDSANRRSILKNDDSSLTT
SIIESLMGYDIGNETINESTIAETQEKYEQEKYEMQQAISERDKKIEELE
QEISNIKKKLRWETDMRFQAEKEVLGLKSQLENIDIQHSISSEKEETQTQ
VKEEEPKETEIGNEETAETEKTEQSKEETSQEMKEQCSENEEETGEGESQ
KEVETKKEETVQDHINFLEDHILGLEDDIEKRDIQITNLQGKLENAQELV
DLNNNTTVSLEVFNKYKAEKKTERTQYREQIKILESQLSEIQASLNKAKS
EKEYLEDQMSSEADEKNNLINTMRDESHKLQTRMTEFEEQYTKDISCYRE
NILSLYQNKMDENLDNILKKIVLLRKQES Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 620..640 |
| None | No IPR available | COILS | Coil | Coil | coord: 473..496 |
| None | No IPR available | COILS | Coil | Coil | coord: 567..615 |
| None | No IPR available | COILS | Coil | Coil | coord: 371..416 |
| None | No IPR available | COILS | Coil | Coil | coord: 529..556 |
| None | No IPR available | PFAM | PF13637 | Ank_4 | coord: 197..249
e-value: 9.3E-6
score: 26.0 |
| None | No IPR available | GENE3D | 1.20.5.50 | | coord: 562..667
e-value: 9.2E-5
score: 21.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 437..509 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 288..333 |
| None | No IPR available | CDD | cd00204 | ANK | coord: 127..249
e-value: 3.18593E-32
score: 120.566 |
| None | No IPR available | CDD | cd00204 | ANK | coord: 60..184
e-value: 4.47094E-30
score: 114.403 |
| IPR002110 | Ankyrin repeat | SMART | SM00248 | ANK_2a | coord: 63..92
e-value: 0.0042
score: 26.3
coord: 96..125
e-value: 0.17
score: 21.0
coord: 130..159
e-value: 0.0011
score: 28.2
coord: 196..225
e-value: 0.22
score: 20.6
coord: 229..260
e-value: 1200.0
score: 4.4
coord: 163..192
e-value: 0.0025
score: 27.1 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 130..162
score: 11.167 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 163..195
score: 11.381 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 63..95
score: 10.553 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 196..228
score: 10.232 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 24..125
e-value: 8.0E-21
score: 73.7 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 126..194
e-value: 2.2E-23
score: 82.0 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 195..269
e-value: 8.7E-13
score: 47.6 |
| IPR020683 | Ankyrin repeat-containing domain | PFAM | PF12796 | Ank_2 | coord: 102..194
e-value: 8.1E-15
score: 55.1 |
| IPR020683 | Ankyrin repeat-containing domain | PROSITE | PS50297 | ANK_REP_REGION | coord: 34..249
score: 48.782 |
| IPR020683 | Ankyrin repeat-containing domain | SUPERFAMILY | 48403 | Ankyrin repeat | coord: 32..251 |
Blast
BLAST of TCONS_00059336-protein vs. Swiss-Prot (Human)
Match: RAI14 (Ankycorbin OS=Homo sapiens GN=RAI14 PE=1 SV=2) HSP 1 Score: 169.474 bits (428), Expect = 8.298e-44 Identity = 88/228 (38.60%), Postives = 128/228 (56.14%), Query Frame = 0
Query: 3 MKRLKGKFRLSSTTSLPATVVLDEWTKYDERLIDAAYKSDRERIKETIRKKGASPVKVSRDGQTALHISVKKGMLDCVEFMLAENPDLSTIDLQGRTVYHIAASKGDPVMLKKLLDYSRWCLEVKDTKEMTALHYAVASGENECVKLLINNNSPVDLRDGEGRTPLLTAIMNGYEKIAMTLVLHGVDVNAPDYKERTPIFMACIQGMRDVVALLISKGADSKLVDAEG 230
MK LK KFR S T +EW K D+RL+ A D E++ + KKGAS K +G+TA H++ KG ++C+ M+ D++ D G + H+AA ++KLL S+ E D+ TALHYA A G + V++L + SP++L+D +G PLL A+ NG+ +I L+ HG DVN+ + RT + +AC G + V LI KGAD LVD+ G
Sbjct: 1 MKSLKAKFRKSDT---------NEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTTGHSALHLAAKNSHHECIRKLLQ-SKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHGADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLG 218
The following BLAST results are available for this feature:
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