TCONS_00059342-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059342-protein
Unique Name	TCONS_00059342-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1072

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059342-protein ID=TCONS_00059342-protein|Name=TCONS_00059342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1072bp
MLNVKIKQEKDLNPVRAISQNTVSNVTLSTPGSSSQTPQTSAPSSKLPGA
SSPTPGTSAGSSALIANLFGEESQQSQTNDLPPDIVQKMNIFSQDSHDIQ
RENSNTGRRGQPDLLDGRGAISGFLLAKDKLPQPAEPPEEQLAMQYDVPI
GSSSSDDDDMDSSSMHFSENMLARRRRRRKGQDITAHIGANPNELLEDAS
NVSMRNWGLETPGTDPADTRFANTPPPVIKKNQLDELFDQISEFPKDETV
EPCTAVKTKMLLHQKRALNWMILRENTTELPPFWEKCGSFFINTASRNRL
YELPVSIKGGILADDMGLGKTLTTIALILTNHKDGKPLVNMKRKGLVPMS
VDDITTSAGGKLSIKKKKEGYLKTKTTTKSDFKKPGFQFRQMYLQQMGKK
KKKKSKKKSKKKDSSDLFSSDSDDELNKSTSSVNKHVNNLLNSSAELSPG
SSKAVAPKGMFGQEATDRKMTLIICPMSVLSNWTDQFSEHLAPNVDLQIY
IYYGPDRVRDINFLKQHDVVISTYGTVSGDYRGYIGKNRVSPLHKINWLR
IVLDEGHIIRNARSQQTQAMVELNSQIRWLITGTPIQNRMTDLWSMLKFL
RLEPFANRRWWFHYVVKSMKRKARRGEQPYNRVQKLIKHVAIRRMKTDKI
DGQPLVKLPERRVVIQHVKFNEDERKLYDAMHKDGKLVVCKYIRAGTALK
NYANVLVIIMRLRQLCCHPTLCVKAVKKLQKALEMMDQLQENINQEGSIL
DNPENGDGENDGTTFNEDEREKLIQQLMQLLSSGDSEECSICLEILQDPV
ITRCAHVFCSNCINDVIESAELAPVCPLCRGDIDQRSMLKVPQVSRYEEE
ESSTQNGNNAKKKSEDYEDEDDEPFISSSKVDAVMTALTALRESDSSIKS
LVVSQFTSFLDVLQRPLRRDGFHFVRLDGTMNQASRARVIEEFNTRGDYT
PTIMLLSLTAGGVGLNLCAASRVFLLDPAWNPAVEEQCFDRAHRLGQKED
VTIVKYVVEDTVEDRMLVLQQQKRELMEKAFGVRTQTPEERRSHALRDIA
TLLGINLRQEQRRAEAQPYIVS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037358	XLOC_037358	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059342	TCONS_00059342	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR000330	SNF2_N
IPR017907	Znf_RING_CS
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 722..749
None	No IPR available	COILS	Coil	Coil	coord: 1009..1029
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 788..829 e-value: 5.7E-9 score: 35.6
None	No IPR available	GENE3D	3.40.50.10810		coord: 228..649 e-value: 5.6E-52 score: 175.7
None	No IPR available	GENE3D	3.40.50.300		coord: 880..1033 e-value: 4.6E-28 score: 97.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 396..430
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 842..874
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..192
None	No IPR available	CDD	cd00046	DEXDc	coord: 467..585 e-value: 1.52505E-11 score: 62.3548
None	No IPR available	CDD	cd00079	HELICc	coord: 875..998 e-value: 3.95723E-17 score: 78.8188
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 784..841
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 256..611 e-value: 2.8E-28 score: 109.9
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 434..603 score: 16.092
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 911..996 e-value: 1.4E-16 score: 71.0
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 890..996 e-value: 2.0E-12 score: 47.4
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 890..1045 score: 13.093
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 789..829 e-value: 7.6E-8 score: 42.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 789..830 score: 13.36
IPR001841	Zinc finger, RING-type	CDD	cd00162	RING	coord: 788..833 e-value: 3.74969E-12 score: 62.078
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 757..879 e-value: 3.9E-18 score: 65.2
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 263..721 e-value: 6.7E-73 score: 245.3
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 804..813
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 468..644 coord: 221..341
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 653..725 coord: 871..1055 coord: 763..779

Blast

[Close]

BLAST of TCONS_00059342-protein vs. Swiss-Prot (Human)
Match: HLTF (Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2)

HSP 1 Score: 664.455 bits (1713), Expect = 0.000e+0
Identity = 355/855 (41.52%), Postives = 522/855 (61.05%), Query Frame = 0

Query:  231 KNQLDELFDQISEFPKDETVEPCTAVKTKMLLHQKRALNWMILRENTTELPPFWEKCGSFFINTASRNRLYELPVSIKGGILADDMGLGKTLTTIALILTNHKDGKPL-VNMKRKGLVP--MSVDDITTSAGGKLSIKKKKEGYLK-----TKTTTKSDFKKPGFQFRQMYLQQMGKKKKKKSKKKSKKKDSSDLFSSDSDDEL------------NKSTSSVNKHVNNLLNSSAELS--PGSSKAVAPKGMFGQEATDR-------KMTLIICPMSVLSNWTDQFSEHLAPNVDLQIYIYYGPDRVRDINFLKQHDVVISTYGTVSGDYRGYIGKNRVSPLHKINWLRIVLDEGHIIRNARSQQTQAMVELNSQIRWLITGTPIQNRMTDLWSMLKFLRLEPFANRRWWFHYVVKSMKRKARRG-EQPYNRVQKLIKHVAIRRMKTDKIDGQPLVKLPERRVVIQHVKFNEDERKLYDAMHKDGKLVVCKYIRAGTALKNYANVLVIIMRLRQLCCHPTLCVKAVKKLQKALEMMDQLQENINQEGSILDNPENGDGENDGTTFNEDEREKLIQQLMQLLSSGDSEECSICLEILQDPVITRCAHVFCSNCINDVIESAELAPVCPLCRGDIDQRSMLKVPQVSRYEEEESSTQNGNNAKKKSEDYEDEDDEPFISSSKVDAVMTALTALRESDSSIKSLVVSQFTSFLDVLQRPLRRDGFHFVRLDGTMNQASRARVIEEFNTRGDYTPTIMLLSLTAGGVGLNLCAASRVFLLDPAWNPAVEEQCFDRAHRLGQKEDVTIVKYVVEDTVEDRMLVLQQQKRELMEKAFGVRTQTPEERRSHALRDIATLLGI 1055
            K + D+LF+ + E  K   +EP  A++T +L HQK+AL WM+ REN+ ELPPFWE+    + NT +     + P ++ GGILADDMGLGKTLT IA+ILTN  DG+PL +   +K L+    +V+D +   GG  +  +K +G  K     ++  + SD K+   +FR   L     K++K + +  +  DS ++ +S+   ++             ++ +  +K + ++  + A  S  P + K +  KG    E + +       + TLIICP+SVLSNW DQF +H+  +V L  Y+YYGPDR+R+   L + D+V++TY  ++ DY    G    SPLH I WLR++LDEGH IRN  +QQT+A+++L S+ RW++TGTPIQN + DLWS+L FL+L+PF +R WW     ++++R    G E    R+Q LIK++ +RR KT KI G+P+++LPER+V IQH+  +++ERK+Y ++  +G+  + +Y   GT L +YA+VL +++RLRQ+CCH  L   AV                            NG   ND     E+ R+KLI+++  +LSSG  EEC+ICL+ L  PVIT CAHVFC  CI  VI++ +    CPLCR DI + ++L+ P                  ++ + D E + D  + SSSK++A+M ALT LR+ + +IKSLVVSQFT+FL +++ PL+  GF F RLDG+M Q  R   I+ F      +PTIMLLSL AGGVGLNL AASRVFL+DPAWNPA E+QCFDR HRLGQK++V I K++V+D+VE+ ML +Q +KREL   AFG +    +E +   + +I TL+ +
Sbjct:  211 KTEFDKLFEDLKEDDKTHEMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGN-NTSEKADGLSKDASRCSEQPSISDIKEKS-KFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQSETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDY----GTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWH----RTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNAVS--------------------------SNGPSGNDTP---EELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECP-----------------PEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009

The following BLAST results are available for this feature:

BLAST of TCONS_00059342-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059342-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HLTF	0.000e+0	41.52	Helicase-like transcription factor OS=Homo sapiens...	[more]

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TCONS_00059342-protein (polypeptide) - C. hemisphaerica