TCONS_00059404-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059404-protein
Unique NameTCONS_00059404-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length643

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059404-protein ID=TCONS_00059404-protein|Name=TCONS_00059404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=643bp
MKTKKYNTIDQFVAKQRELLKLEQSEEVCQRQQIYENKSIKELVKRGVCV
NRLRVDHHRTGLFGKHVIVFNLNTSDLHSHKLSSGDIVGLYPNKGDNGDL
IASGLVASSRPPNISVAFNEAFDLLATSLYRLMKLTNDVTYRRLNSAINN
MEKSNKETNPFFAALFPCKTVEDSYINPTVKITQHFNQNLDQSQKDAVYF
AVSTSLPLSVIHGPPGTGKTTTVVEIIQQLIQKFHKKILVCAPSNIAVDN
LVERLAKLKTKVVRLGHPARIIEDVQRYSLDAIIDSHDSSDVIRELKAEI
TTKCAAKSKGGSKQKWDEVKVLRKDLAHREQNLMKSILVDADVILSTTTS
ASKEGPLKLLEDDHFDLLIIDEAAQAMEISCWIPMLKVKRCILAGDHLQL
PPTIISEKAAREGLEVTLLERVVHGLGQNAVQMLTTQYRMNDLVMRWPSE
ELYENKLVAADMVANHLLCDLEGVTKTENTSNPLVFVDTAGCNMYELEDQ
EEDSKGNTWEVDIVYEHIVQLVEDGVNMRQIGVITPYNLQVDMIRKKVQP
KYPSIEVNSVDGFQGREKEAILISLVRSNQEGKVGFLKEDRRINVAITRA
RRHLFVVGDTSTISRHPFLESFSNFMFEKAVVRSPLVDQQDIN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037395XLOC_037395Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059404TCONS_00059404Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR003593AAA+_ATPase
IPR004483SMUBP-2/Hcs1-like
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 186..429
e-value: 0.0028
score: 23.0
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 205..424
e-value: 1.9E-4
score: 30.8
NoneNo IPR availablePFAMPF13087AAA_12coord: 415..610
e-value: 5.5E-57
score: 192.5
NoneNo IPR availableGENE3D3.40.50.300coord: 181..417
e-value: 6.0E-33
score: 113.3
NoneNo IPR availablePFAMPF13086AAA_11coord: 190..407
e-value: 3.0E-58
score: 197.5
NoneNo IPR availableGENE3D3.40.50.300coord: 435..631
e-value: 1.2E-30
score: 106.0
NoneNo IPR availableCDDcd00046DEXDccoord: 210..266
e-value: 3.27031E-8
score: 51.184
IPR004483Helicase SMUBP-2/Hcs1-likeTIGRFAMTIGR00376TIGR00376coord: 21..635
e-value: 1.9E-185
score: 615.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 184..621

Blast
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BLAST of TCONS_00059404-protein vs. Swiss-Prot (Human)
Match: SMBP2 (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3)

HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 307/654 (46.94%), Postives = 437/654 (66.82%), Query Frame = 0 
Query:    8 TIDQFVAKQRELLKLEQSEEVCQRQQIYENKSIKELVKRGVCVNRLRVDHHRTGLFGKHVIVFNL----NTSDLHSHKLSSGDIVGLYPNKGDNGDLIASGLVASSRPPNISVAFNEAFDLLAT----SLYRLMKLTNDVTYRRLNSAINNMEKSNKETNP-------FFAALFPCKTVEDSYINPTVKITQHFNQNLDQSQKDAVYFAVSTSLPLSVIHGPPGTGKTTTVVEIIQQLIQKFHKKILVCAPSNIAVDNLVERLAKLKTKVVRLGHPARIIEDVQRYSLDAIIDSHDSSDVIRELKAEITTKCAAKSKGGSKQK----WDEVKVLRKDLAHREQNLMKSILVDADVILSTTTSASKEGPLKLLEDDHFDLLIIDEAAQAMEISCWIPMLKVKRCILAGDHLQLPPTIISEKAAREGLEVTLLERVVHGLGQNAVQMLTTQYRMNDLVMRWPSEELYENKLVAADMVANHLLCDLEGVTKTENTSNPLVFVDTAGCNMYELEDQEEDSKGNTWEVDIVYEHIVQLVEDGVNMRQIGVITPYNLQVDMIRKKVQPKYPSIEVNSVDGFQGREKEAILISLVRSNQEGKVGFLKEDRRINVAITRARRHLFVVGDTSTISRHPFLESFSNFMFEKAVVRSPLVDQQDI 642
             ++ FV KQ +LL+LE+  EV +R+   EN S+KEL  RGVC+ +L+V   RTGL+G+ ++ F      + + L S+  +SGDIVGLY +  + G  +A+G++      +++VAF+E+ D   +    + YRL+KL NDVTYRRL  A+  ++K +  + P        F    P    E   I+P       FN  LD SQK+AV FA+S    L++IHGPPGTGKTTTVVEII Q +++   K+L CAPSNIAVDNLVERLA  K +++RLGHPAR++E +Q++SLDA++   DS+ ++ +++ +I        K   K++     +E+K+LRK+L  RE+  M   L  A+V+L+T T AS +GPLKLL + +FD+++IDE AQA+E SCWIP+LK ++CILAGDH QLPPT +S KAA  GL ++L+ER+    G   V+ LT QYRM+  +MRW S+ +Y  +L A   VA HLL DL GV  TE T  PL+ VDTAGC ++ELE+++E SKGN  EV +V  HI  LV+ GV  R I V++PYNLQVD++R+ +  ++P +E+ SVDGFQGREKEA+++S VRSN++G+VGFL EDRRINVA+TRARRH+ V+ D+ T++ H FL++   +  +   VR+      DI
Sbjct:    5 AVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLY-DAANEGSQLATGILTRVTQKSVTVAFDESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYH--SGPASSLIEVLFGRSAPSPASE---IHPLT----FFNTCLDTSQKEAVLFALSQK-ELAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTAFEYLDDI 646
The following BLAST results are available for this feature:
BLAST of TCONS_00059404-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMBP20.000e+046.94DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGH... [more]
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