TCONS_00059418-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059418-protein
Unique NameTCONS_00059418-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length846

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059418-protein ID=TCONS_00059418-protein|Name=TCONS_00059418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=846bp
MAESWKRKTNGSVFKNTLYKQWGIINTWDCYSVSKASKNLIQRLKRHKVL
DDHTGCVNTVSWSDSGSLLLSGSDDYSLNIYDSYSTQLVHSIKSGHTANI
FSAKFLPCTSDTKIVSCAGDGMLQYNIIGTEYGQNPFNCHSGTTYEVLVT
PGDPNSFLSCGEDGTVRLFDLRTKTKCNCQECAEDILIDAKHAVTSVSIN
PMLPYHLAIGCKDSFVRVFDRRTLGTSLDTRSVNRNRGWMPGLFCKFKPS
TFKQDSNCRVTSLQYSNDGNDLLVSYCSDYIYLFTVREESSKVDQVSTNH
QEELTDPSESLTDKLPPAKRLRLRGDWSDTGPNARPDTDEEDSPEQNIMQ
RMSEFFSRWIEGAMSSTVRHASTSSEDSDVAQPTPGSSMPIPGSSMSTPG
SSMSTPVGSHSQSHQEEESVISNQRDEPFSGALPTEDGVIISRTLPSFPE
EANPNTHLGEIAAEEPISMENPSNSADTTNGSKTNTTNETSITQDKYTEG
PDEHTPLLNNNRPLDLPSSSRDYLHHSYQTTNTSSDISDSAANPLDSAIA
VGSSSISPLYPDSTTLDRSTSSSEHHQQPCHRFLAVAGRSDSTDHDEEES
PTTPASDTSESTSSATSSHSELPTDTTTTLATNESEDEFELDEAFRERLR
DAYASGTRYTMERQHAASKIQSFIRIHREKQKEIERANARKPNHMYTPKE
KIMYRGHRNARTMIKEANFWGDDFVLSGSDCGRVFIWDRHTAELVMLLEG
DRHVVNCVQPHPFDPVLATSGIDHDIKIWAPLAEKPATLDHAEDIMKRNE
RMLEDSRDTITVPAAFVLRMFASLGSIRRNRRRMTEEDHEEDQSSD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037404XLOC_037404Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059418TCONS_00059418Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR024977Apc4_WD40_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
IPR000048IQ_motif_EF-hand-BS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 697..738
e-value: 1.6
score: 15.8
coord: 741..780
e-value: 2.4E-4
score: 30.4
coord: 85..126
e-value: 0.37
score: 19.7
coord: 130..170
e-value: 0.2
score: 20.7
coord: 246..285
e-value: 25.0
score: 8.2
coord: 43..82
e-value: 4.1E-7
score: 39.6
coord: 180..220
e-value: 0.43
score: 19.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 753..779
e-value: 0.038
score: 14.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 748..779
score: 9.105
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 50..91
score: 12.681
NoneNo IPR availableGENE3D1.10.10.670coord: 82..138
e-value: 1.5E-5
score: 24.3
NoneNo IPR availableGENE3D2.40.50.140coord: 19..81
e-value: 1.2E-8
score: 34.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..346
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 553..642
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 465..522
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 367..434
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 39..100
e-value: 6.2E-6
score: 26.3
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 139..780
e-value: 5.1E-37
score: 127.1
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 704..789
score: 12.394
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 50..229
score: 16.638
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 42..286
coord: 696..780
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 663..692
score: 6.87

Blast
[Close]
BLAST of TCONS_00059418-protein vs. Swiss-Prot (Human)
Match: DCAF6 (DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1)

HSP 1 Score: 533.487 bits (1373), Expect = 1.758e-177
Identity = 346/862 (40.14%), Postives = 471/862 (54.64%), Query Frame = 0 
Query:   38 KNLIQRLKRHKVLDDHTGCVNTVSWSDSGSLLLSGSDDYSLNIYDSYSTQLVHSIKSGHTANIFSAKFLPCTSDTKIVSCAGDGMLQYNIIGTEYGQN---PFNCHSGTTYEVLVTPGDPNSFLSCGEDGTVRLFDLRTKTKCNCQECAEDILIDAKHAVTSVSINPMLPYHLAIGCKDSFVRVFDRRTLGTSLDTRSVNRNRGWMPGLFCKFKPSTFKQDSNCRVTSLQYSNDGNDLLVSYCSDYIYLFTVREESSKVDQVSTNHQEELTDPS-ESLTDKL--PPAKRLRLRGDWSDTGPNARPDT----DEEDSPEQNIMQRMSEFFSRWIEGA-------------------------------------MSSTVRHASTSSEDSDVAQPTPGSSMPIPGSSMSTPGSS-MSTPVGSHSQSHQEEESVISNQRDEPFSGALPTEDGVIISRTLPSFPEEANPNTHLGEIAAEEPISMENPSNSADTTNGSKTNTTNETS--------ITQDKYTEGPDEHTPLLNNNRPLDLPSSSRDYLHHSYQTTNTSSDISDSAANPLDSAIAVGSSSISPLYPDSTTLDRSTSSSEHHQQPCHRFLAVAGRSDSTDHDEEESPTTPASDTSESTSSATSSHSELPTDTTTTLATNES--EDEFELDEAFRERLRD----AYASGTRYTM---ERQHAASKIQSFIRIHREKQK--EIERANARKPNHMYTPKEKIMYRGHRNARTMIKEANFWGDDFVLSGSDCGRVFIWDRHTAELVMLLEGDRHVVNCVQPHPFDPVLATSGIDHDIKIWAPLAE-KPATLDHAEDIMKRNERMLEDSRDTITVPAAFVLRMFASLGSIRRNR 831
            +  IQRLK    L+ H GCVNT+ W+D+G  +LSGSDD  L I + YS +++ +I+SGH ANIFSAKFLPCT+D +IVSC+GDG++ Y  +  +   N    F CH GTTYE++  P DP +FLSCGEDGTVR FD R KT C  ++C +DILI+ + A TSV+I P +PY+LA+GC DS VR++DRR LGT        R      G+  +F PS     S CRVTSL YS DG ++LVSY SDYIYLF  ++++++          EL  PS E   ++L  PP KRLRLRGDWSDTGP ARP++    D E SP  ++MQRMS+  SRW E A                                     +S T     T +E     QP+  S+M     S S+P  S  STP+ S   S Q +    S       S                +  E+ +P    GE     P+   + S    TT+  K N T+E S        I     +EG +E     ++ +P +  S ++     S   T     +S  A NP+++ I +  S      P    LD  ++S E +     R   V   S S++  +E     P +    ST SAT+ ++  P     T AT  S  E+    D A ++            G RY     +R+ A ++IQ F R  +E+++  E++  N R+P        K++Y+GHRN+RTMIKEANFWG +FV+SGSDCG +FIWDRHTAE +MLLE D HVVNC+QPHPFDP+LA+SGID+DIKIW+PL E +      A++++ RNE MLE++R+TITVPA+F+LRM ASL  IR +R
Sbjct:   35 REFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRG---TTGMVARFIPSHLNNKS-CRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTAR----------ELKTPSAEERREELRQPPVKRLRLRGDWSDTGPRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEASEVAQSNRGRGRSRPRGGTSQSDISTLPTVPSSPDLEVSETAMEVDTPAEQ--FLQPSTSSTMSAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHHTHHQSD---------------NNNEKLSPKPGTGE-----PVLSLHYSTEGTTTSTIKLNFTDEWSSIASSSRGIGSHCKSEGQEESFVPQSSVQPPEGDSETKAPEESSEDVTKYQEGVS--AENPVENHINITQSDKFTAKP----LD--SNSGERNDLNLDRSCGVPEESASSEKAKE-----PETSDQTSTESATNENNTNPEPQFQTEATGPSAHEETSTRDSALQDTDDSDDDPVLIPGARYRAGPGDRRSAVARIQEFFRRRKERKEMEELDTLNIRRP------LVKMVYKGHRNSRTMIKEANFWGANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEETRNTITVPASFMLRMLASLNHIRADR 841
The following BLAST results are available for this feature:
BLAST of TCONS_00059418-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCAF61.758e-17740.14DDB1- and CUL4-associated factor 6 OS=Homo sapiens... [more]
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