TCONS_00059500-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059500-protein
Unique NameTCONS_00059500-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length962

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059500-protein ID=TCONS_00059500-protein|Name=TCONS_00059500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=962bp
MPLRLDVKRTLSARSDRAKAVDLHPTEPWMLVCLYNGNCHVWDHQRQTLI
KSFEVTDLPVRTGCFVARKNWVVTGSDDMMIRIFNYNTLEKVHGFEAHSD
YLRCLQVHPTQPYLVSSSDDMSIKLWDWDKKWQCVQTFEGHTHYVMQICI
NPKDNNQFASASLDRTIKVWQLGSQHPNFTLEGHDKGVNCVDYFHGGEKP
YLVSGADDRLVKIWDYQNKTCVKTLDGHAQNVSSVLFHPELPIILSGSED
GTVRIWHANTHRLESTLNYGMERVWCMSALKGSNNIGIGYDEGSIMVKFG
REEPAMSMDSSGKIIFAKHSEILQANLKNLGDTEYKDGERLPVAVKEMGS
CEIYPQTLSHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAADS
SEYAVRDGSKVKIFKNFKEKKSFKPDYGAEGIFGGALLGVKSNSGLCFFD
WETQELIRRIDIQPKNVFWSENGEMCCITTDESYFILKYVPDNVTAALEN
KEEMITEDGIEDAFDVLGEIEEIIKTGVWVGDCFIYTNSVNRLNYYVGGE
IVTVSHLDKSMYLLGYIPKDNHLYLTDKDLNVVSYHLLLSVLEYQTAVMR
KDFDTAKAVLPTIPKEQRNRVAHFLEKQGFKQQALHVSCDPEHKFELAVQ
IGDLRVAYDIAVEAESEQKWKHLAELAIQKCEFALAQECLYRAQDYAGLL
LLASCSGDAQTMEKLAIDAAKNGKYNVAFLAFFSLGRLEECLELLCKSNR
LPEAAFLARTYLPSQVPRIVKLWKEDLAKTNKKAADSLADPTQYGNLFPD
IQEAIRAETYLRPERMALRPAADYSALSSNLERNVLEELAGKSDEEVTAL
MAQTEQMNLKDTAPQPRASPPSSPPPSTPQQSIPTPSNESPPSAAPAPES
QSEPVKPPSPTPQAEPALPTDIEPPQERKDSIDLEIGSDFDDDFGDQDVD
DLDLDDLDDDLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037458XLOC_037458Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059500TCONS_00059500Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR016453COPB2
IPR015943WD40/YVTN_repeat-like_dom
IPR006692Coatomer_WD-assoc_reg
IPR017986WD40_repeat_dom
IPR011044Quino_amine_DH_bsu
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0030117membrane coat
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030117 membrane coat
molecular_function GO:0005515 protein binding
molecular_function GO:0005198 structural molecule activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 158..172
score: 38.48
coord: 202..216
score: 38.14
coord: 114..128
score: 40.36
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 174..215
e-value: 1.0E-7
score: 41.7
coord: 88..127
e-value: 5.9E-8
score: 42.4
coord: 46..85
e-value: 0.11
score: 21.6
coord: 4..43
e-value: 0.31
score: 20.1
coord: 131..171
e-value: 2.9E-10
score: 50.1
coord: 218..257
e-value: 7.3E-10
score: 48.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 220..256
e-value: 2.6E-8
score: 34.3
coord: 91..127
e-value: 3.1E-6
score: 27.7
coord: 132..170
e-value: 3.0E-5
score: 24.6
coord: 178..215
e-value: 6.3E-6
score: 26.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 225..266
score: 16.323
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 138..180
score: 11.879
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 181..224
score: 12.915
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 95..127
score: 13.483
NoneNo IPR availableGENE3D2.80.10.50coord: 145..165
e-value: 1.6E-8
score: 34.2
NoneNo IPR availableGENE3D1.10.10.670coord: 83..120
e-value: 6.2E-15
score: 54.4
coord: 121..144
e-value: 6.1E-9
score: 35.2
coord: 166..187
e-value: 4.0E-8
score: 32.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 858..962
NoneNo IPR availableCDDcd00200WD40coord: 8..297
e-value: 1.39643E-67
score: 227.218
IPR016453Coatomer beta' subunit (COPB2)PIRSFPIRSF005567Beta'-COPcoord: 2..875
e-value: 0.0
score: 1369.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 188..578
e-value: 4.2E-39
score: 133.9
coord: 6..82
e-value: 9.8E-10
score: 37.4
IPR006692Coatomer, WD associated regionPFAMPF04053Coatomer_WDADcoord: 319..762
e-value: 8.3E-176
score: 585.3
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 11..266
score: 47.457
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 3..313
coord: 349..377
IPR011044Quinoprotein amine dehydrogenase, beta chain-likeSUPERFAMILY50969YVTN repeat-like/Quinoprotein amine dehydrogenasecoord: 340..586

Blast
[Close]
BLAST of TCONS_00059500-protein vs. Swiss-Prot (Human)
Match: COPB2 (Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2)

HSP 1 Score: 1363.59 bits (3528), Expect = 0.000e+0
Identity = 632/877 (72.06%), Postives = 749/877 (85.40%), Query Frame = 0 
Query:    1 MPLRLDVKRTLSARSDRAKAVDLHPTEPWMLVCLYNGNCHVWDHQRQTLIKSFEVTDLPVRTGCFVARKNWVVTGSDDMMIRIFNYNTLEKVHGFEAHSDYLRCLQVHPTQPYLVSSSDDMSIKLWDWDKKWQCVQTFEGHTHYVMQICINPKDNNQFASASLDRTIKVWQLGSQHPNFTLEGHDKGVNCVDYFHGGEKPYLVSGADDRLVKIWDYQNKTCVKTLDGHAQNVSSVLFHPELPIILSGSEDGTVRIWHANTHRLESTLNYGMERVWCMSALKGSNNIGIGYDEGSIMVKFGREEPAMSMDSSGKIIFAKHSEILQANLKNLGDTEYKDGERLPVAVKEMGSCEIYPQTLSHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAADSSEYAVRDG-SKVKIFKNFKEKKSFKPDYGAEGIFGGALLGVKSNSGLCFFDWETQELIRRIDIQPKNVFWSENGEMCCITTDESYFILKYVPDNVTAALENKEEMITEDGIEDAFDVLGEIEEIIKTGVWVGDCFIYTNSVNRLNYYVGGEIVTVSHLDKSMYLLGYIPKDNHLYLTDKDLNVVSYHLLLSVLEYQTAVMRKDFDTAKAVLPTIPKEQRNRVAHFLEKQGFKQQALHVSCDPEHKFELAVQIGDLRVAYDIAVEAESEQKWKHLAELAIQKCEFALAQECLYRAQDYAGLLLLASCSGDAQTMEKLAIDAAKNGKYNVAFLAFFSLGRLEECLELLCKSNRLPEAAFLARTYLPSQVPRIVKLWKEDLAKTNKKAADSLADPTQYGNLFPDIQEAIRAETYLRPERMALRPAADYSALSSNLERNVLEELAGKSDEEVTALMAQTEQMNLKDTAPQPRASPPSSPPP 876
            MPLRLD+KR L+ARSDR K+VDLHPTEPWML  LYNG+  VW+H+ QTL+K+FEV DLPVR   FVARKNWVVTG+DDM IR+FNYNTLE+VH FEAHSDY+RC+ VHPTQP++++SSDDM IKLWDWDKKW C Q FEGHTHYVMQI INPKDNNQFASASLDRTIKVWQLGS  PNFTLEGH+KGVNC+DY+ GG+KPYL+SGADDRLVKIWDYQNKTCV+TL+GHAQNVS   FHPELPII++GSEDGTVRIWH++T+RLESTLNYGMERVWC+++L+GSNN+ +GYDEGSI+VK GREEPAMSMD++GKII+AKHSE+ QANLK +GD E KDGERLP+AVK+MGSCEIYPQT+ HNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEF WA DSSEYA+R+  S VKIFKNFKEKKSFKPD+GAE I+GG LLGV+S +GL F+DW+  ELIRRI+IQPK++FWS++GE+ CI T+ES+FILKY+ + V AA E   E +TEDGIEDAF+VLGEI+EI+KTG+WVGDCFIYT+SVNRLNYYVGGEIVT++HLD++MYLLGYIPKDN LYL DK+LN++SY LL+SVLEYQTAVMR+DF  A  VLPTIPKEQR RVAHFLEKQGFKQQAL VS DPEH+FELA+Q+G+L++AY +AVEAESEQKWK LAELAI KC+F LAQECL+ AQDY GLLLLA+ SG+A  + KLA  A ++GK NVAF+++F  G+++ CLELL ++ RLPEAAFLARTYLPSQV R+VKLW+E+L+K N+KAA+SLADPT+Y NLFP ++EA   E +++     L PA  Y  ++ N ERNV+EE  GK  +              + TA Q     P+SP P
Sbjct:    1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKLGREEPAMSMDANGKIIWAKHSEVQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSIVKIFKNFKEKKSFKPDFGAESIYGGFLLGVRSVNGLAFYDWDNTELIRRIEIQPKHIFWSDSGELVCIATEESFFILKYLSEKVLAAQET-HEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIISYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVSTDPEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNANMVNKLAEGAERDGKNNVAFMSYFLQGKVDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQYPLVTPNEERNVMEE--GKDFQPS------------RSTAQQELDGKPASPTP 862
The following BLAST results are available for this feature:
BLAST of TCONS_00059500-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COPB20.000e+072.06Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE... [more]
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