Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00059571-protein ID=TCONS_00059571-protein|Name=TCONS_00059571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp MDSFIAGCLGGGLGMFVGHPFDTIKVRLQSEHVQSSSGLRYKGIIDGTIK IIKQEGVTGIYKGATAPIVGVSAQNALMFGIQRFTRQYFQPNLKGEFMAG MVTGTLMSVLAAPVEMTKTRLQVQNIGERTVRAQRKYKGPIDVLHKMYLE EGIRGPGRSFWITLVRDSPGYGIYFSSYPWLCQLMFGADQHIHDLNVLQL SLAGSLAGAISWLVIYPIDVIKTRVCSEGFAPAGKYRNYAHCFTECYREG GVKTFFRGLFPTLIRALPVNGVTFSTVSVVESYFAKRHSET Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0055085 transmembrane transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0055085
transmembrane transport
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 Score = 22.72 Score = 41.09 Score = 31.67 Score = 22.43 Expect = 2.4E-20 / Score = 72.2 Expect = 5.8E-15 / Score = 54.9 Expect = 2.4E-21 / Score = 75.4 Score = 18.952 Score = 23.006 Score = 23.671 Expect = 1.0E-74 / Score = 250.4 Score = Sequence PR00926 PF00153 PS50920 PS50920 PS50920 G3DSA:1.50.40.10 SSF103506
IPR Term IPR Description Source Source Term Source Description Alignment
IPR002067 Mitochondrial carrier protein PRINTS PR00926 MITOCARRIER coord: 109..123 score: 41.09 coord: 256..274 score: 22.43 coord: 96..109 score: 22.72 coord: 210..228 score: 31.67
IPR018108 Mitochondrial substrate/solute carrier PFAM PF00153 Mito_carr coord: 3..91 e-value: 2.4E-20 score: 72.2 coord: 194..287 e-value: 2.4E-21 score: 75.4 coord: 95..185 e-value: 5.8E-15 score: 54.9
IPR018108 Mitochondrial substrate/solute carrier PROSITE PS50920 SOLCAR coord: 91..184 score: 18.952
IPR018108 Mitochondrial substrate/solute carrier PROSITE PS50920 SOLCAR coord: 195..283 score: 23.006
IPR018108 Mitochondrial substrate/solute carrier PROSITE PS50920 SOLCAR coord: 1..88 score: 23.671
IPR023395 Mitochondrial carrier domain GENE3D 1.50.40.10 coord: 1..284 e-value: 1.0E-74 score: 250.4
IPR023395 Mitochondrial carrier domain SUPERFAMILY 103506 Mitochondrial carrier coord: 3..276
Blast
BLAST of TCONS_00059571-protein vs. Swiss-Prot (Human)
Match:
MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2)
HSP 1 Score: 220.705 bits (561), Expect = 9.432e-71
Identity = 121/282 (42.91%), Postives = 173/282 (61.35%), Query Frame = 0
Query: 3 SFIAGCLGGGLGMFVGHPFDTIKVRLQSEHVQSSSGLRYKGIIDGTIKIIKQEGVTGIYKGATAPIVGVSAQNALMFGIQRFT-RQYFQPNLKGEFMAGMVTGTLMSVLAAPVEMTKTRLQVQNIGERTVRAQRKYKGPIDVLHKMYLEEGIRGPGRSFWITLVRDSPGYGIYFSSYPWLCQLMFGADQHIHDLNVLQLSLAGSLAGAISWLVIYPIDVIKTRVCSEGFAPAGKYRNYAHCFTECYREGGVKTFFRGLFPTLIRALPVNGVTFSTVSVVESY 283
F+AGC GG G+ VGHPFDT+KVRLQ VQS +Y+G + IIKQE V G+YKG +P++G++ NAL+FG+Q T R + +F+AG G + V+ P+E+ KTRLQ+Q+ G R YKG +D L ++Y EG+RG R TL+R++P +G+YF +Y L + + + L V +L LAG +G +SWL YP+DV+K+R+ ++G A +YR C + YR G + F RGL TL+RA PVN TF+TV+VV +Y
Sbjct: 4 DFLAGCAGGVAGVLVGHPFDTVKVRLQ---VQSVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQDAGP-----ARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRAL--GCEPGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFATVTVVLTY 275
The following BLAST results are available for this feature:
BLAST of TCONS_00059571-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M D S F I A G C L G G G L G M F V G H P F D T I K V R L Q S E H V Q S S S G L R Y K G I I D G T I K I I K Q E G V T G I Y K G A T A P I V G V S A Q N A L M F G I Q R F T R Q Y F Q P N L K G E F M A G M V T G T L M S V L A A P V E M T K T R L Q V Q N I G E R T V R A Q R K Y K G P I D V L H K M Y L E E G I R G P G R S F W I T L V R D S P G Y G I Y F S S Y P W L C Q L M F G A D Q H I H D L N V L Q L S L A G S L A G A I S W L V I Y P I D V I K T R V C S E G F A P A G K Y R N Y A H C F T E C Y R E G G V K T F F R G L F P T L I R A L P V N G V T F S T V S V V E S Y F A K R H S E T 50 100 150 200 250 Expect = 9.43e-71 / Id = 42.91 Sequence MCATL
Match Name E-value Identity Description
MCATL 9.432e-71 42.91 Mitochondrial basic amino acids transporter OS=Hom... [more]
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