TCONS_00059598-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059598-protein
Unique NameTCONS_00059598-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length746

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059598-protein ID=TCONS_00059598-protein|Name=TCONS_00059598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=746bp
MSTQAMKHKIEEENEVQTGNDENKTPNNGEQEPSAKKAKLENEGTKQINT
AESSVVENIEAESKVGMKMLINKYRFQGIIKQRFSDFMVREIDLDGNKTF
LTDTNHVDDQKPATESNKGEPKEMKDTTCPIDDVTLVKRIDDFAKNESEE
TLDDRITFLNNDKENRKACHMYFKTKYQNLETDVINKENDTREFVIYYKK
SKKGDPRARKNRNTEGQFCHFVLHKQNKDTMDTINLLSKKLRITSKLFSY
AGTKDRRATTIQRVAVKQCRSKRLKELNKILINIVLGNFQYKSEPLKLGD
LSGNEFTLIIRDVTNATENQIMDACRSLQENGFVNYFGLQRFGTGGAGTH
EIGRALLKDDFEKACNLILAEPSENDNDRSKERNALKIYSNNKDPQKAFQ
ALRNRNGIEGKLLSCLKNSPKDFLGALGRLPRNTRLLYLHSYQSFIWNNA
VSYRLEKFGFKPVVGDLVLTSETDEEGHKKARLLTEDDIASNTFTIEDIV
LPMPGYDVIYPNNSCYDYMKSLMEKDGLDITNMRRAQKDNSLSGAYRTFL
VKPKNMTWELMRYDDFTISLIENDVDKMKKSEEEEKTKTKNENECKKESG
EEIGENMKAKSSGDSETIKIGSGVDFAVGADDGNKIIISDDENEAKNSTE
TKITEIESSVNSVNSEPDKSGKSESAMETDSKTEADINDKDSKTLGVSDG
KYLALKLIFQLPSSCYATTALRELLTSDSSFKAQQQLNANFNKKKM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037488XLOC_037488Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059598TCONS_00059598Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001656PsdUridine_synth_TruD
IPR020119PsdUridine_synth_TruD_CS
IPR011760PsdUridine_synth_TruD_insert
IPR020103PsdUridine_synth_cat_dom
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 579..599
NoneNo IPR availablePIRSFPIRSF037016Pseudouridin_synth_eukcoord: 3..743
e-value: 1.7E-171
score: 569.8
NoneNo IPR availableGENE3D3.30.2340.10coord: 413..550
e-value: 1.5E-34
score: 118.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 639..696
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 578..616
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..127
NoneNo IPR availableCDDcd01291PseudoU_synthcoord: 695..725
e-value: 1.15098E-4
score: 39.8552
NoneNo IPR availableCDDcd02576PseudoU_synth_ScPUS7coord: 218..561
e-value: 3.23245E-132
score: 398.138
IPR001656Pseudouridine synthase, TruDTIGRFAMTIGR00094TIGR00094coord: 192..728
e-value: 8.4E-78
score: 260.5
IPR001656Pseudouridine synthase, TruDPFAMPF01142TruDcoord: 211..559
e-value: 9.8E-72
score: 241.9
IPR020119Pseudouridine synthase TruD, conserved sitePROSITEPS01268UPF0024coord: 252..265
IPR011760Pseudouridine synthase, TruD, insertion domainPROSITEPS50984TRUDcoord: 332..552
score: 38.681
IPR020103Pseudouridine synthase, catalytic domainSUPERFAMILY55120Pseudouridine synthasecoord: 429..564
coord: 69..92
coord: 704..726
coord: 208..362

Blast
[Close]
BLAST of TCONS_00059598-protein vs. Swiss-Prot (Human)
Match: PUS7 (Pseudouridylate synthase 7 homolog OS=Homo sapiens GN=PUS7 PE=1 SV=2)

HSP 1 Score: 395.971 bits (1016), Expect = 4.064e-128
Identity = 209/522 (40.04%), Postives = 319/522 (61.11%), Query Frame = 0 
Query:   62 ESKVGMKMLINKYR-FQGIIKQRFSDFMVREIDLDGNKTFLTDTN-HVDDQKPATESNKGEPKEMKDTTCPIDDVTLVKRIDDFAKNESEETLDDRITFLNNDKENRKACHMYFKTKYQNLETDVINKENDTREFVIYYKKSKKG--DPRARKNRNTEGQFCHFVLHKQNKDTMDTINLLSKKLRITSKLFSYAGTKDRRATTIQRVAVKQCRSKRLKELNKILINIVLGNFQYKSEPLKLGDLSGNEFTLIIRDVTNATENQIMDACRSLQENGFVNYFGLQRFGTGGAGTHEIGRALLKDDFEKACNLILAEPSENDNDRSKERNALKIYSNNKDPQKAFQALRNRNGIEGKLLSCL-KNSPKDFLGALGRLPRNTRLLYLHSYQSFIWNNAVSYRLEKFGFKPVVGDLVLTSETDEEGHKKARLLTEDDIASNTFTIEDIVLPMPGYDVIYPNNSCYDYMKSLMEKDGLDITNMRRAQKDNSLSGAYRTFLVKPKNMTWELMRYDDFTISLIENDVDKM 578
            E+ VG+   ++ ++ F GI+K+R+SDF+V EI  DG  + L D +  VD++ P+ +       E K            +R+++    +++ET    I  + + KE R   H   K+ +  LET   ++E   +  V Y+   KK   +PR      + G +CHFVL+K+NKDTMD IN+LSK LR+   +FSY GTKD+RA T+Q +AV +  ++RL  LNK L+N  LGNF Y+  PLKLG+L GN FT+++R++T  T++Q+  A  SL+E GF+NY+G+QRFGT    T+++GRA+L++ + +  +LIL   S    ++       + ++  KDP  A + L  +  +EG+LL  L K   K+ + A G +PRN RL+Y+HSYQS++WNN VS R+E +G KPV GDLVL   T       A  + EDD+  N ++I D+V+P+PG+DVIYP +   +  + ++  D LDI NMR   +D SLSGAYR  +++P+N++WE++ YDD  I L   DVD +
Sbjct:  111 EADVGITKFVSSHQGFSGILKERYSDFVVHEIGKDGRISHLNDLSIPVDEEDPSEDIFTVLTAEEK------------QRLEELQLFKNKET-SVAIEVIEDTKEKRTIIHQAIKSLFPGLETKTEDREGK-KYIVAYHAAGKKALANPRKHSWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKITAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNIT-GTDDQVQQAMNSLKEIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRS--GAEKGYLVKCREEWAKTKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNMVSKRIEDYGLKPVPGDLVLKGAT-------ATYIEEDDV--NNYSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMRHKIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL 606
The following BLAST results are available for this feature:
BLAST of TCONS_00059598-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PUS74.064e-12840.04Pseudouridylate synthase 7 homolog OS=Homo sapiens... [more]
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