TCONS_00059618-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059618-protein
Unique NameTCONS_00059618-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059618-protein ID=TCONS_00059618-protein|Name=TCONS_00059618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MAKRKSTEGEQAASKKSKKEDEKVDEVEKENDQKENFSLVTKTKDGRDSN
LKICSWNVAGLRACLKKAGLDYIKEEDADIVCLQETKVTEKEIPGEVTQL
DKKVPSILPKKDGYYMYWYEAEKKGYSGVSLWSKTKPVSIKNGMGKEEHD
NEGRLITAEFDKYYVVTSYVPNSGKKLVRLDYRRSWNTDLKDYLNKLKEK
KPVVFCGDLNVAHQEIDIANPKANKRNSGFTDEERGDMTELLNEGYIDSY
RSLYPDQEKMYTFWTYMANARAKNVGWRIDYFILSKSLEEDLCDSIMRTK
VMGSDHCPIVATFAIK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037500XLOC_037500Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059618TCONS_00059618Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004808AP_endonuc_1
IPR005135Endo/exonuclease/phosphatase
IPR020847AP_endonuclease_F1_BS
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO:0004519endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
cellular_component GO:0005622 intracellular
molecular_function GO:0003677 DNA binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0004518 nuclease activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 10..30
NoneNo IPR availableTIGRFAMTIGR00195TIGR00195coord: 51..313
e-value: 1.7E-88
score: 294.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableCDDcd09087Ape1-like_AP-endocoord: 51..313
e-value: 4.09607E-155
score: 436.598
IPR004808AP endonuclease 1TIGRFAMTIGR00633TIGR00633coord: 51..313
e-value: 9.0E-97
score: 321.5
IPR004808AP endonuclease 1PROSITEPS51435AP_NUCLEASE_F1_4coord: 51..315
score: 47.693
IPR005135Endonuclease/exonuclease/phosphataseGENE3D3.60.10.10coord: 48..316
e-value: 2.1E-56
score: 190.7
IPR005135Endonuclease/exonuclease/phosphatasePFAMPF03372Exo_endo_phoscoord: 55..306
e-value: 1.1E-18
score: 67.6
IPR005135Endonuclease/exonuclease/phosphataseSUPERFAMILY56219DNase I-likecoord: 51..314
IPR020847AP endonuclease 1, binding sitePROSITEPS00726AP_NUCLEASE_F1_1coord: 78..87

Blast
[Close]
BLAST of TCONS_00059618-protein vs. Swiss-Prot (Human)
Match: APEX1 (DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1 PE=1 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 3.690e-106
Identity = 146/275 (53.09%), Postives = 194/275 (70.55%), Query Frame = 0 
Query:   43 TKDGRDSNLKICSWNVAGLRACLKKAGLDYIKEEDADIVCLQETKVTEKEIPGEVTQLDKKVPSILPKKDGYYMYW-YEAEKKGYSGVSLWSKTKPVSIKNGMGKEEHDNEGRLITAEFDKYYVVTSYVPNSGKKLVRLDYRRSWNTDLKDYLNKLKEKKPVVFCGDLNVAHQEIDIANPKANKRNSGFTDEERGDMTELLNE-GYIDSYRSLYPDQEKMYTFWTYMANARAKNVGWRIDYFILSKSLEEDLCDSIMRTKVMGSDHCPIVATFAI 315
            +  G+ + LKICSWNV GLRA +KK GLD++KEE  DI+CLQETK +E ++P E+ +L    P +       + YW   ++K+GYSGV L S+  P+ +  G+G EEHD EGR+I AEFD + +VT+YVPN+G+ LVRL+YR+ W+   + +L  L  +KP+V CGDLNVAH+EID+ NPK NK+N+GFT +ER    ELL      DS+R LYP+    YTFWTYM NAR+KNVGWR+DYF+LS SL   LCDS +R+K +GSDHCPI    A+
Sbjct:   54 SPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQEL----PGL------SHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
The following BLAST results are available for this feature:
BLAST of TCONS_00059618-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APEX13.690e-10653.09DNA-(apurinic or apyrimidinic site) lyase OS=Homo ... [more]
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