TCONS_00059910-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059910-protein
Unique NameTCONS_00059910-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length165

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059910-protein ID=TCONS_00059910-protein|Name=TCONS_00059910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MAGVVFEDIFDVKDIDPGGKKFDRVSRLHCESESFKMDLILDVNTQIYPV
DLGEKFRLVLATTLREDGTPDDGEYNSADNAPSRADQFEYVMHGKVYRID
AENSGGGDHFGNRLSAYVSYGGLLMRLQGDANNLHDQLRKTNGFRIWRNE
TWNFQIITEHFMWIF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037674XLOC_037674Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059910TCONS_00059910Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 2..140
e-value: 3.4E-68
score: 242.5
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 7..137
e-value: 2.2E-47
score: 160.7
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..149
e-value: 1.3E-47
score: 159.4
NoneNo IPR availableGENE3D2.40.50.140coord: 1..148
e-value: 9.7E-55
score: 184.1
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..139

Blast
[Close]
BLAST of TCONS_00059910-protein vs. Swiss-Prot (Human)
Match: RPAB3 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens GN=POLR2H PE=1 SV=4)

HSP 1 Score: 222.246 bits (565), Expect = 1.392e-75
Identity = 108/135 (80.00%), Postives = 118/135 (87.41%), Query Frame = 0 
Query:    1 MAGVVFEDIFDVKDIDPGGKKFDRVSRLHCESESFKMDLILDVNTQIYPVDLGEKFRLVLATTLREDGTPDDGEYNSADNAPSRADQFEYVMHGKVYRIDAENSGGGDHFGNRLSAYVSYGGLLMRLQGDANNLH 135
            MAG++FEDIFDVKDIDP GKKFDRVSRLHCESESFKMDLILDVN QIYPVDLG+KFRLV+A+TL EDGT DDGEYN  D+ PSRADQFEYVM+GKVYRI+ + +        RLSAYVSYGGLLMRLQGDANNLH
Sbjct:    1 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETST--EAATRLSAYVSYGGLLMRLQGDANNLH 133
The following BLAST results are available for this feature:
BLAST of TCONS_00059910-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPAB31.392e-7580.00DNA-directed RNA polymerases I, II, and III subuni... [more]
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