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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00059913-protein ID=TCONS_00059913-protein|Name=TCONS_00059913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MAEDMVDIELTIGVSSNEIEVINIEKKALDEPNSSQEKNKTKEPDLTIEP
NSLEEPEVIEVDSDYEFKNKRKKHDAVKSKRVQVEQKAQQKRNKSKTCET
CGKVHRTKYHLNRHILTNHTREEDLPFKCSLCGKGKATKDRLDTHIQQVH
QNTSNHQCSKCGKYFPTKIRLTAHTKKDQCAMIED Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 74..94 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 156..176
e-value: 0.016
score: 15.5
coord: 97..119
e-value: 0.0049
score: 17.2 |
| None | No IPR available | GENE3D | 2.20.28.30 | | coord: 35..107
e-value: 8.5E-4
score: 19.1 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 139..184
e-value: 5.4E-10
score: 39.0 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 108..138
e-value: 2.5E-10
score: 40.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 27..55 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 96..119
e-value: 1.2
score: 18.1
coord: 127..150
e-value: 0.089
score: 21.9
coord: 156..176
e-value: 14.0
score: 11.9 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 127..155
score: 9.889 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 96..124
score: 9.993 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 156..176
score: 8.663 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 93..134 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 126..176 |
Blast
The following BLAST results are available for this feature:
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