TCONS_00060024-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060024-protein
Unique NameTCONS_00060024-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060024-protein ID=TCONS_00060024-protein|Name=TCONS_00060024-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
MDDLDALLADLQNSSRSTGKSKPADDFPPPPSGNLTNGTVGKQEPGSTVQ
VSVTAVEALLNELDTQVSNSKSSAQTNGPPMPEPQHANATRTASTATKEL
DDLMASLSDFKVNTGEQPVNNRTPSVPEADETDAPPEKPAITSTTHTYHV
SSNDDYAKVEKRPSQKSKSSTPQQNQQPNLDSMLGSLQTTMSKQGVATVT
KGTCAGCNKPIIGQVCTALGKTWHPEHFSCCICDMELGTKTFFERDGKPY
CENDYHEIFAPKCFACNGPILDSCVTSMDRTWHPEHFVCQECGRPFGDSG
FHEKDGKAYCREDYFRLFAPKCSGCNKAIIENYISALNGHWHPHCFACME
CHQPFQNGSFFEHEGMPYCEMHYHSRRGSLCYSCQKPITGRCITAMHRKF
HPEHFICAFCLKQLNKGTFKEQNDKPYCHGCFVKLFG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037769XLOC_037769Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060024TCONS_00060024Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 262..313
e-value: 7.6E-20
score: 81.9
coord: 203..254
e-value: 5.7E-23
score: 92.3
coord: 321..372
e-value: 2.2E-19
score: 80.4
coord: 380..431
e-value: 2.7E-15
score: 66.8
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 263..317
e-value: 2.0E-16
score: 59.8
coord: 381..435
e-value: 1.6E-12
score: 47.4
coord: 204..257
e-value: 3.3E-17
score: 62.4
coord: 322..376
e-value: 3.8E-16
score: 59.0
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 322..355
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 381..414
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 380..437
score: 9.851
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 320..379
score: 14.672
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 262..319
score: 9.534
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 202..261
score: 14.662
NoneNo IPR availableGENE3D2.10.110.10coord: 197..263
e-value: 8.7E-22
score: 76.4
NoneNo IPR availableGENE3D2.10.110.10coord: 323..375
e-value: 1.1E-20
score: 72.8
coord: 376..437
e-value: 1.0E-17
score: 63.3
NoneNo IPR availableGENE3D2.10.110.10coord: 264..322
e-value: 5.9E-24
score: 83.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availableCDDcd09336LIM1_Paxillin_likecoord: 204..256
e-value: 2.50734E-31
score: 113.252
NoneNo IPR availableCDDcd09337LIM2_Paxillin_likecoord: 263..314
e-value: 1.83411E-30
score: 110.556
NoneNo IPR availableCDDcd09338LIM3_Paxillin_likecoord: 322..374
e-value: 6.59778E-31
score: 112.043
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 201..228
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 407..437
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 348..410
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 289..351
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 230..292

Blast
[Close]
BLAST of TCONS_00060024-protein vs. Swiss-Prot (Human)
Match: PAXI (Paxillin OS=Homo sapiens GN=PXN PE=1 SV=3)

HSP 1 Score: 473.781 bits (1218), Expect = 8.597e-164
Identity = 241/465 (51.83%), Postives = 295/465 (63.44%), Query Frame = 0 
Query:    1 MDDLDALLADLQNSSRSTGKSKPADDF--PPPPSGNL--------TNGTVG-----------KQEPGSTVQVSVTAVEALLNELDTQVSNSKSSAQTNGPPMPEPQHANATR-----TASTATKELDDLMASLSDFKVNTGEQPVNNR---TPSVPEADETDAPPEKPAITSTTHTYHVSSNDDYAKVEKRPSQKSKSSTPQQNQQPNLDSMLGSLQTTMSKQGVATVTKGTCAGCNKPIIGQVCTALGKTWHPEHFSCCICDMELGTKTFFERDGKPYCENDYHEIFAPKCFACNGPILDSCVTSMDRTWHPEHFVCQECGRPFGDSGFHEKDGKAYCREDYFRLFAPKCSGCNKAIIENYISALNGHWHPHCFACMECHQPFQNGSFFEHEGMPYCEMHYHSRRGSLCYSCQKPITGRCITAMHRKFHPEHFICAFCLKQLNKGTFKEQNDKPYCHGCFVKLF 436
            + +LD LL +L N+ +      PAD+    PP  G L        TN  +G           K+  G  ++    +VE+LL+EL++ V +   +   N   M  PQ   +T+     +AS+AT+ELD+LMASLSDFK+   EQ  +         P      +P                  D+   + +  +  S            LDSMLGSLQ+ ++K GVATV KG C  C KPI GQV TA+GKTWHPEHF C  C  E+G++ FFERDG+PYCE DYH +F+P+C+ CNGPILD  VT++DRTWHPEHF C +CG  FG  GFHEKDGKAYCR+DYF +FAPKC GC +AI+ENYISALN  WHP CF C EC  PF NGSFFEH+G PYCE+HYH RRGSLC  CQKPITGRCITAM +KFHPEHF+CAFCLKQLNKGTFKEQNDKPYC  CF+KLF
Sbjct:  142 LSELDRLLLEL-NAVQHNPPGFPADEANSSPPLPGALSPLYGVPETNSPLGGKAGPLTKEKPKRNGGRGLEDVRPSVESLLDELESSVPSPVPAITVNQGEMSSPQRVTSTQQQTRISASSATRELDELMASLSDFKIQGLEQRADGERCWAAGWPRDGGRSSP---------------GGQDEGGFMAQGKTGSSSPPGGPPKPGSQLDSMLGSLQSDLNKLGVATVAKGVCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDYHNLFSPRCYYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDMFAPKCGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFEHDGQPYCEVHYHERRGSLCSGCQKPITGRCITAMAKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQNCFLKLF 590
The following BLAST results are available for this feature:
BLAST of TCONS_00060024-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAXI8.597e-16451.83Paxillin OS=Homo sapiens GN=PXN PE=1 SV=3[more]
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