TCONS_00060030-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060030-protein
Unique NameTCONS_00060030-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060030-protein ID=TCONS_00060030-protein|Name=TCONS_00060030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MATQTAVLDLGASTCKFGLSTDADPRVIPNCISKAKNERRKVFYGDQLSE
CKDFSGLFYVLPFQKGYLVNWDVQRQLFDYMFSKENLKVDVTETNLVYTE
PIFNFTSIKECLDEIFFEEHQFKAVCRKRTAELANFKHAAESAKNPLCSL
IVDSGFSFTHILPVCQGQILKRSARRIDVGGKVMTNYLKEIISYRQLHVL
DETYVMNQVKEDCCFVSTDFNHDMETTKQKRKLNTIARDYILPDYTNVKR
GYIRPIEEMWTKFTGTEQLLKMNNERFTVPELLFNPSDVGIQQMGIPEAI
HHSIQTTEVLQQPHFYQNIILIGGNAAIPGYHKRVTSDVRKLCPDVFDLD
ILCPDNPATYAWQGGVTLSKTADFVSKYCITKAEYEESGKNICFQKFDK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037772XLOC_037772Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060030TCONS_00060030Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004000Actin
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004000Actin familySMARTSM00268actin_3coord: 3..398
e-value: 2.9E-101
score: 352.4
IPR004000Actin familyPFAMPF00022Actincoord: 3..397
e-value: 4.7E-85
score: 285.5
NoneNo IPR availableGENE3D3.30.420.40coord: 1..178
e-value: 9.4E-40
score: 135.4
NoneNo IPR availableGENE3D3.90.640.10coord: 181..274
e-value: 4.9E-25
score: 86.8
NoneNo IPR availableGENE3D3.30.420.40coord: 275..363
e-value: 4.4E-19
score: 67.7
NoneNo IPR availableSUPERFAMILY53067Actin-like ATPase domaincoord: 3..136
NoneNo IPR availableSUPERFAMILY53067Actin-like ATPase domaincoord: 146..397

Blast
[Close]
BLAST of TCONS_00060030-protein vs. Swiss-Prot (Human)
Match: ARP6 (Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1)

HSP 1 Score: 440.654 bits (1132), Expect = 3.505e-154
Identity = 211/396 (53.28%), Postives = 288/396 (72.73%), Query Frame = 0 
Query:    5 TAVLDLGASTCKFGLSTDADPRVIPNCISKAKNERRKVFYGDQLSECKDFSGLFYVLPFQKGYLVNWDVQRQLFDYMFSKENLKVDVTETNLVYTEPIFNFTSIKECLDEIFFEEHQFKAVCRKRTAELANFKHAAESAKNPLCSLIVDSGFSFTHILPVCQGQILKRSARRIDVGGKVMTNYLKEIISYRQLHVLDETYVMNQVKEDCCFVSTDFNHDMETTKQKRKLNTIARDYILPDYTNVKRGYIRPIEEMWT--KFTGTEQLLKMNNERFTVPELLFNPSDVGIQQMGIPEAIHHSIQTTEVLQQPHFYQNIILIGGNAAIPGYHKRVTSDVRKLCPDVFDLDILCPDNPATYAWQGGVTLSKTADFVSKYCITKAEYEESGKNICFQKFD 398
            T VLD GA   K G S + +  VIPNC  ++K  R K F  +Q+ E KD SGLFY+LPFQKGYLVNWDVQRQ++DY+F KE  +VD  +TN++ TEP FNFTSI+E ++EI FEE+QF+AV R     L+  ++  ++    LC +IVDSG+SFTHI+P C+ +  K +  RI+VGGK++TN+LKEIISYRQLHV+DET+V+NQVKED C+VS DF  DM+  K K + NT+  DY+LPD++ +K+G+ +P EEM    K+   EQ+L++ NERF VPE+LFNPSD+GIQ+MGIPEAI +SIQ      QPHF++NI+L GGN+  PG+  RV S+VR L P  +D+ ++ P+NP TYAW+GG  +S+  DF     +T+ +YEE+G ++C +KFD
Sbjct:    3 TLVLDNGAYNAKIGYSHE-NVSVIPNCQFRSKTARLKTFTANQIDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSE-LCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEENTVMIDYVLPDFSTIKKGFCKPREEMVLSGKYKSGEQILRLANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRDRVYSEVRCLTPTDYDVSVVLPENPITYAWEGGKLISENDDF-EDMVVTREDYEENGHSVCEEKFD 395
The following BLAST results are available for this feature:
BLAST of TCONS_00060030-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARP63.505e-15453.28Actin-related protein 6 OS=Homo sapiens GN=ACTR6 P... [more]
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