TCONS_00061065-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00061065-protein
Unique Name	TCONS_00061065-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	738

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00061065-protein ID=TCONS_00061065-protein|Name=TCONS_00061065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=738bp
FMIFDTKKRRKEVKMATPGLSTPNRTTRKRRPMNVSPALNLSTSLLEVND
DIEERRLRRKSKLLTGNILSPGGVQASPSRPGQNDKDKRKSISLSHAGVT
NAQLKEHYANCIKLSSENKINVKNAFGLHLIDYMKDLLKESNKDENATNF
QVASCTLDAGVKIYAYRVDSVHSEAYKVLGSLGRAVNNPDEPEDGEQPDS
QEGGSSQPVAKKTKKRAAGKTIETNMKNINCEQLDIDYEVDPFFTKISAA
CDEAGTTSLLSFHLRSHSDLNDLLLDSSTTVDSIPNATVGETTNDDDMVD
LSSLRDMYNNLPLTKMEICPQFSNFNFTGWDKDSQDIGGNIHLPDDSFDG
DNIHRFDENAPVVSEAMESFDTGGCGGMDDFSDNDERNDALDDLQFGHQG
AAIPDNGMSSKDQLFGTTGTSHIALSLNPSEYSYFSQDHMKMWAGPLHWK
VKAKSKDKTISTTNASKMSTKKTQIRIDFDEEIDLKKHFTTGRGATHMKA
VAMDNKQAAQMSVLPADLHYETESLFKLSTRTFVSIKRQSDAVDLKNEGD
EWYNYDNKNDREGFCPALDDYGDDNYDDDDGGGCGADITLDEGGLNNDDQ
QITTFGGAGLVAPPNKVRVLDINYAKAAKRIDIKKLKGTMWKMLTAKKEN
DKENKENNNLPKPDIQETESEKDQPKDVSGSYTFKSMYDALPNKVSTNMS
KNLSAPIAFVCLLYLANEKNLKLTGCEDMANIKIESGP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038325	XLOC_038325	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00061065	TCONS_00061065	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022816	Condensin_barren_su2

Vocabulary: **Biological Process**
Term	Definition
GO:0007076	mitotic chromosome condensation

Vocabulary: **Cellular Component**
Term	Definition
GO:0000796	condensin complex

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007076	mitotic chromosome condensation
cellular_component	GO:0000796	condensin complex

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022816	Condensin complex subunit 2/barren	PIRSF	PIRSF017126	Condensin_H	coord: 20..738 e-value: 2.8E-130 score: 433.1
IPR022816	Condensin complex subunit 2/barren	PFAM	PF05786	Cnd2	coord: 34..735 e-value: 2.1E-124 score: 416.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 647..679
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..218
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..90

Blast

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BLAST of TCONS_00061065-protein vs. Swiss-Prot (Human)
Match: CND2 (Condensin complex subunit 2 OS=Homo sapiens GN=NCAPH PE=1 SV=3)

HSP 1 Score: 318.546 bits (815), Expect = 6.871e-98
Identity = 253/743 (34.05%), Postives = 369/743 (49.66%), Query Frame = 0

Query:   29 KRRPMNVSPALNLSTSLLE---VNDDIEERRLRRKSKL--LTGNILSPGGVQASPSRPGQNDKDKRKSISLSHAGVTNAQLKEHYANCIKLSSENKINVKNAFGLHLIDYMKDLLKESNKDENATNFQVASCTLDAGVKIYAYRVDSVHSEAYKVLGSLGRAVNNPDEPEDGEQPDSQEGGSSQPVAKKTKKRAAGKTIETNMKNINCEQLDIDYEVDPFFTKISAACDEAGTTSLLSFHLRSHSDLNDLLLDSSTTVDSIPNATVGETTNDDDM--VDLSSLRDMYNNLPLTKM----EICPQFSNFNFTGWDKDSQDIGGNIHLPDDSFDGDNIHRFDENAPVVSEAMESFDTGGCGGMDDFSDNDERNDALDDLQFGHQGAAIPDNGMSSKDQLF----GTTGTSHIALSLNPSEYSYFSQDHMKMWAGPLHWKVKAKSKDKTISTTNASKMSTKKTQIRIDFDEEIDLKKHFTTGRGATHMKAVAMDNKQAAQMSVLPADLHYETESLFKLSTRTFVSIKRQSDAVDLKNEGDEW---YNYDNKNDREGFCPALDD------------YGDDNYDDDDGGGCGADITLDEGGLNNDDQ--QITTFGGAGLVAPPNKVRVLDINYAKAAKRIDIKKLKGTMWKMLTA--KKENDKENKENNNLPKPDIQETESEKDQPKDVSGSYTFKSMYDALPNKVSTNMSKNLSAPIAFVCLLYLANEKNLKLTGCEDMANIKIESG 737
            ++ P+N+       T +LE    NDD +ER  RR+S++  L  +  SP  + ASPS        +   IS +    TN Q+ EHY+ CIKLS+ENKI  KNAFGLHLID+M ++LK+  KD   TNF+VA+ TLDA  KIYA RVD+VH++ Y+VLG LG+   + +E E      S     +   A K KK+   +TIE N+ N+N  + D   E+DP F K +A+ DE  T  +    L      ++LL  S      +   + GE     ++  V+++ L+      PL +     +ICP  + F FT WD ++ +   +  +  D F   N   FD NA V       F  G  G  DDF  NDE +          +    P    S ++++     G   T    LS+ P EYSYFS   M MWAGP HW+ + + K    S +   K STKK       +++ID   +F   + AT +    ++N Q  + + LP D +Y  ++L +L  +    + + +    ++ E  E    Y+Y+N ND   FCP L               G     D     C    T  + G   + Q   ITT+G + LVA P KV  ++I+YAK AK++D+KKLK +MW +LTA   KE D E        +  + E   E    K +SG    K +  +LP      M++NLS P+AF CLL+LANEKNLKL G ED++++ +  G
Sbjct:   40 RKAPLNIP-----GTPVLEDFPQNDDEKERLQRRRSRVFDLQFSTDSPR-LLASPS-------SRSIDISATIPKFTNTQITEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQ--KDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPS-----DVQTLSTGEPLELPELGCVEMTDLK-----APLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALV--DKFK-KNDQVFDINAEVDESDCGDFPDGSLG--DDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDF-EDDIDFDVYFRKTKAATILTKSTLEN-QNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVETEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQQNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSGKEADAEANHREAGKEAALAEVADE----KMLSG--LTKDLQRSLP----PVMAQNLSIPLAFACLLHLANEKNLKLEGTEDLSDVLVRQG 740

The following BLAST results are available for this feature:

BLAST of TCONS_00061065-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00061065-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CND2	6.871e-98	34.05	Condensin complex subunit 2 OS=Homo sapiens GN=NCA...	[more]

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TCONS_00061065-protein (polypeptide) - C. hemisphaerica