TCONS_00062103-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062103-protein
Unique NameTCONS_00062103-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062103-protein ID=TCONS_00062103-protein|Name=TCONS_00062103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MFINHYTTEVNGYGGIGAYQNMGNYLTGLNQRKRKTPFDGFDSSATKTMC
IPSKRSYRSVQDEGRKTKQSNLMFDNEIEEPKAQRAIANIRERQRTQALN
QAFNSLRKIIPTLPSDKLSKIQTLKLAVMYIEFLSKVLECDEQNTSHQQI
DFMLAQEKISYAFSVWRMEGDFYAANGGFGAAPHNKTGHYFTEHELNSCT
YEFNPNFGNQLLYKPLTLKSSESESSGIKEEENERNKDDVMNIENLTAQQ
RYG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038926XLOC_038926Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062103TCONS_00062103Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 229..249
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..253
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 89..140
e-value: 3.6E-15
score: 66.4
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3D4.10.280.10coord: 74..140
e-value: 2.0E-16
score: 59.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 84..134
e-value: 1.0E-16
score: 60.5
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 83..134
score: 15.878
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 81..139
e-value: 8.9798E-14
score: 62.6167
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 82..151

Blast
[Close]
BLAST of TCONS_00062103-protein vs. Swiss-Prot (Human)
Match: TWST2 (Twist-related protein 2 OS=Homo sapiens GN=TWIST2 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.266e-36
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 0 
Query:   78 IEEPKAQRAIANIRERQRTQALNQAFNSLRKIIPTLPSDKLSKIQTLKLAVMYIEFLSKVLECDEQNTSHQQIDFMLAQEKISYAFSVWRMEGDF 172
             EE ++QR +AN+RERQRTQ+LN+AF +LRKIIPTLPSDKLSKIQTLKLA  YI+FL +VL+ DE +       + +A E++SYAFSVWRMEG +
Sbjct:   61 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSY-VAHERLSYAFSVWRMEGAW 154
The following BLAST results are available for this feature:
BLAST of TCONS_00062103-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TWST22.266e-3663.16Twist-related protein 2 OS=Homo sapiens GN=TWIST2 ... [more]
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