TCONS_00062227-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062227-protein
Unique NameTCONS_00062227-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062227-protein ID=TCONS_00062227-protein|Name=TCONS_00062227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MGTYKSMFLWILPIAFIIVTLPYNTLSLPVSPVPPLLNKLLKDQNVTLGF
ILKGLQGPPGHDGNPGMAGNPGSPGMPGEPGLQGAPGIPGGAGFLGPPGS
PGLPGMDGLPGPGGLPGSPGWPGGSGEPGIPGPPGPPGRDGNAGATPIRY
NGTVKCEEDTAWLRCNEYKHISIISAFWGRRNFGLCTEHTGNLVANKYCP
TTPLFLTKVKDACEGTTMCEIRCTKFFFHDQTCLDVYKYLEVYYKCIEII
NGHEVVNEDNLLNANFLG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039009XLOC_039009Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062227TCONS_00062227Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000922Lectin_gal-bd_dom
IPR008160Collagen
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0030246 carbohydrate binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000922D-galactoside/L-rhamnose binding SUEL lectin domainPFAMPF02140Gal_Lectincoord: 163..246
e-value: 1.3E-18
score: 67.1
IPR000922D-galactoside/L-rhamnose binding SUEL lectin domainPROSITEPS50228SUEL_LECTINcoord: 155..247
score: 10.607
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 54..105
e-value: 5.2E-8
score: 32.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..146

Blast
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BLAST of TCONS_00062227-protein vs. Swiss-Prot (Human)
Match: CO6A5 (Collagen alpha-5(VI) chain OS=Homo sapiens GN=COL6A5 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.545e-17
Identity = 47/109 (43.12%), Postives = 53/109 (48.62%), Query Frame = 0 
Query:   52 LKGLQGPPGHDGNPGMAGNPGSPGMPGEPGLQGAPGIPGGAGFLGPP------------------GSPGLPGMDGLPGPGGLPGSPGWPGGSGEPGIPGPPGPPGRDGN 142
            LKG +G  G DGNPG+ G+ G  G  G  G  GA G  G  GF GP                   G PG+ G  G PG  G PGS G PG  GE G PG PG PG++ N
Sbjct: 1414 LKGSRGHRGEDGNPGVRGDTGPQGDKGIAGCPGAWGQKGLKGFSGPKGGHGDDGIDGLDGEEGCHGFPGIKGEKGDPGSQGSPGSRGAPGQYGEKGFPGDPGNPGQNNN 1522

HSP 2 Score: 80.1073 bits (196), Expect = 7.468e-17
Identity = 50/107 (46.73%), Postives = 53/107 (49.53%), Query Frame = 0 
Query:   47 TLGFILKGLQGPPGHDGNPGMAGNPGSPGMP---GEPGLQGAPGIPGGAGFLGPPGSPGLP------GMDGLPGPGGLPGSPGWPGGSGEPGIPGPPGPPGRDGNAG 144
            TLG   +GLQGP G  GNPG  G  GS G     G PGL GA G  G  G LG  G PGLP      G  G  G  G  G PG+ G  G  G+ GP G PG  G  G
Sbjct: 1577 TLG--AEGLQGPQGSQGNPGRKGEKGSQGQKGPQGSPGLMGAKGSTGRPGLLGKKGEPGLPGDLGPVGQTGQRGRQGDSGIPGY-GQMGRKGVKGPRGFPGDAGQKG 1680

HSP 3 Score: 79.337 bits (194), Expect = 1.335e-16
Identity = 45/107 (42.06%), Postives = 51/107 (47.66%), Query Frame = 0 
Query:   53 KGLQGPP------GHDGNPGMAGNPGSPGMPGEPGLQGAPGIPGGAGFLGPPGSPGLPGMDGLPGPGGLPG---------SPGWPGGSGEPGIPGPPGPPGRDGNAG 144
            KG+QG P      G +G  G+ G  G PG PG  G  GA G+ G  G  G PG  G  G  G  GP G PG          PG  G  GEPG+PG  GP G+ G  G
Sbjct: 1542 KGVQGSPSSRGSRGREGQRGLRGVSGEPGNPGPTGTLGAEGLQGPQGSQGNPGRKGEKGSQGQKGPQGSPGLMGAKGSTGRPGLLGKKGEPGLPGDLGPVGQTGQRG 1648
The following BLAST results are available for this feature:
BLAST of TCONS_00062227-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CO6A51.545e-1743.12Collagen alpha-5(VI) chain OS=Homo sapiens GN=COL6... [more]
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