TCONS_00062316-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062316-protein
Unique Name	TCONS_00062316-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	482

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062316-protein ID=TCONS_00062316-protein|Name=TCONS_00062316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp
MEKVSKKSKMNKLPDSIIIEIFSYLSSKELVTKLALVCKTWRCLSYDPSL
WREIQTDGFSSINIQDSTVLRFINYAKTVKTLSLRGCYQISNKVLRGVSI
NGSRLQNLNLENCFKITDRGIITLARACQNLRTVNTLNTLVTEHGLCYLL
QENKHLIELTSAPHTVTLKTIQILSTNCKHLEYLHVEQNEFTPNYKSNKL
NQNKLVSLTNQMIELLASNCLKLQVLILRYPITSIDDHALWRIGSQCKRI
ECVEIGQKTHTAPLSDNGVIALCTRSTNLLRLDLKETFITDFTLQVIAEC
CQSLEHLEFGNTATVSDLGVMSIMNHCHNLDSFSLRAGVHSRLTDLSIFS
IAQSPCARNLIKLSMKDWNITDFGLSVIAKNLPHLLYLSLEQCLLLTNTG
LEHSLKFFHSIHSLELTGTKCITNDKELISFARLLPDSFQSVVLQARSLI
TLPNSSVPCDSITEDGCRRFSDILPECEIIFV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039054	XLOC_039054	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062316	TCONS_00062316	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR006553	Leu-rich_rpt_Cys-con_subtyp
IPR032675	L_dom-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 13..54 e-value: 8.3E-6 score: 35.3
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 11..54 e-value: 2.9E-13 score: 49.4
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 7..54 score: 14.002
IPR001810	F-box domain	SUPERFAMILY	81383	F-box domain	coord: 2..54
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 76..101 e-value: 270.0 score: 3.4 coord: 276..300 e-value: 300.0 score: 3.0 coord: 128..152 e-value: 380.0 score: 2.2 coord: 301..326 e-value: 28.0 score: 11.0 coord: 327..354 e-value: 110.0 score: 6.4 coord: 382..407 e-value: 27.0 score: 11.2 coord: 102..127 e-value: 0.0014 score: 27.9 coord: 357..381 e-value: 440.0 score: 1.7
None	No IPR available	GENE3D	1.20.1280.50		coord: 2..55 e-value: 8.0E-14 score: 50.8
None	No IPR available	GENE3D	3.40.50.2000		coord: 212..326 e-value: 4.6E-6 score: 25.9
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 59..426
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 59..210 e-value: 6.0E-9 score: 34.8
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 327..480 e-value: 1.4E-9 score: 36.8

Blast

[Close]

BLAST of TCONS_00062316-protein vs. Swiss-Prot (Human)
Match: FXL20 (F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.230e-23
Identity = 112/417 (26.86%), Postives = 183/417 (43.88%), Query Frame = 0

Query:   12 KLPDSIIIEIFSYLSSKELVTKLALVCKTWRCLSYDPSLWREIQTDGFSSINIQDSTVLRFINYAKT-VKTLSLRGCYQISNKVLRGVSINGSRLQNLNLENCFKITDRGIITLARACQNLRTVNTLNTLVTEHGLCYLLQENKHLIELTSAPHTVTLKTIQILSTNCKHLEYLHVEQNEFTPNYKSNKLNQNKLVSLTNQMIELLASNCLKLQVLILRYPITSIDDHALWRIGSQCKRIECVEIGQKTHTAPLSDNGVIALCTRSTNLLRLDLKE-TFITDFTLQVIAECCQSLEHLEFGNTATVSDLGVMSIMNHCHNLDSFSLRAGVHSRLTDLSIFSIAQSPCARNLIKLSMKDWNITDFGLSVIAKNL---PHLLYLSLEQCLLLTNTGLEHSLKFFHSIHSLELTGTKCIT 423
            KLP  +++ IFS+L    L  + A V + W  L+ D S W+ I    F   +I+   V          ++ LSLRGC  + +  LR  + N   ++ LNL  C K TD    +L++ C  LR                      HL +L S   ++T  +++ LS  C  LE L++   +                 +T   I+ L   C  L+ L L+   T ++D AL  IG+ C   E V +  +T    ++D G+I +C     L  L     + ITD  L  + + C  L  LE    + ++D+G  ++  +CH L+   L   V  ++TD ++  ++       ++ LS  +  ITD G+  +         L  + L+ C L+T+  LEH LK  HS+  +EL   + IT
Sbjct:   27 KLPKELLLRIFSFLDVVTLC-RCAQVSRAWNVLALDGSNWQRIDLFDFQR-DIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLR----------------------HL-DLASCT-SITNMSLKALSEGCPLLEQLNISWCD----------------QVTKDGIQALVRGCGGLKALFLK-GCTQLEDEALKYIGAHCP--ELVTLNLQT-CLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECV--QITDSTLIQLSIHCPRLQVLSLSHCEL-ITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEH-LKSCHSLERIELYDCQQIT 393

The following BLAST results are available for this feature:

BLAST of TCONS_00062316-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062316-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FXL20	3.230e-23	26.86	F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBX...	[more]

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TCONS_00062316-protein (polypeptide) - C. hemisphaerica