TCONS_00062389-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062389-protein
Unique Name	TCONS_00062389-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	739

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062389-protein ID=TCONS_00062389-protein|Name=TCONS_00062389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=739bp
MEPTPPKGSRNKRFAQNRPFYESSKKTSAEIISEARSTVRPLQTRRPETP
LDLNNRTLFGKQREGRPPSAVSISSSFHDSRPPSGKGKLTPLANVPDFKE
LELRLEEKFXKGKLTPLANVPDFKELELRLEEKFTIDKNSNEIGNDNNNN
NNSAKKQMKIKGNIIPKSAEPSFSRARRSIKSSKVVEERRVHSGPKERPP
IFRDDDLKRSNSYSDLTSTDEKVTETKHSSNEQIDSDSFYNTNIEPLINQ
MHLNYEYGDIESLLVNLDVLWRVLEVSNMVGQNAKIAREHRAAILTKLSS
YVNNKNALLQLRICKLYLGLKVTKRNLSAVCKSFYQVTKNEKNDDMVLQE
KMIEPILTILNNPEQVDSTTDLVYLVGALKILSNQPKCSKEIRLLDLLTP
LKCLLQFSVKKYTSAVQIKESNHMLIQASSLLNNLADSATLANQFIENNI
LQLLMDLMKARLDDVDLIMPIASIFSKLTISESICNNVVEVESNPGLLMN
TLIKHTNTQEIVVRFGYAFGNMANHSPKFRDIILSSNDMTKNFVKVIRFY
TKKLRKDRSQTDLTESSKECEEDEDVLVKLIRVIANLSITEEGAILFSNN
EELIQVILALLENCDLLKLSQELIINTSATVNNMSFFNDPDSILVKNTET
FTRAFLDIVLTKNQDCCVEAMRALGNFTQSEDSRRLLVEGRGLQAIIMLL
DSSSIDLAFCVCGVLINMMVDRSTRTLIKNDQQTISKYV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039092	XLOC_039092	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062389	TCONS_00062389	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 478..633 e-value: 4.0E-6 score: 25.4 coord: 634..737 e-value: 3.6E-8 score: 32.2 coord: 256..477 e-value: 2.4E-9 score: 36.0
None	No IPR available	CDD	cd00020	ARM	coord: 600..719 e-value: 0.00153676 score: 36.9088
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 338..721

Blast

[Close]

BLAST of TCONS_00062389-protein vs. Swiss-Prot (Human)
Match: ARMC2 (Armadillo repeat-containing protein 2 OS=Homo sapiens GN=ARMC2 PE=2 SV=4)

HSP 1 Score: 199.519 bits (506), Expect = 9.761e-54
Identity = 137/498 (27.51%), Postives = 254/498 (51.00%), Query Frame = 0

Query:  239 FYNTNIEPLINQMHLNYEYGDIESLLVNLDVLWRVLEVSNMVGQNAKIAREHRAAILTKLSSYVNNKNALLQLRICKLYLGLKVTKRNLSAVCKSFYQVTKNEKNDDMVLQEKMIEPILTILNNPEQVDSTTDLVYLVGALKILSNQPKCSKEI---RLLDLLTPLKCLLQFSVKKYTSAVQIKESNHMLIQASSLLNNLADSATLANQFIENNILQLLMDLMKARLDDVDLIMPIASIFSKLTISESICNNVVEVESNPGLLMNTLIKHTNTQEIVVRFGYAFGNMANHSPKFRDIILSSNDMTKNFVKVIR-FYTKKLRKDRSQTDLTE---SSKECEEDEDVLVKLIRVIANLSITEEGAILFSNNEELIQVILALLENCDLLKLSQELIINTSATVNNMSFFNDPDSILVKNTETFTRAFLDIVLTKNQDCCVEAMRALGNFTQSEDSRRLLVEGRGLQAIIMLLDSSSIDLAFCVCGVLINMMVDRSTRTLIK 729
            F+NT I P++ ++    +  +IE++      L   LE  NM+G   K     R+ +L  L   V+  +  L L++ K+ L LKV+++NL  VCK  +++++NEKND ++  + ++E +L +L + +   +    +Y +G++K +S       E+     +++L  L   +  ++KK      +  S H+L+Q ++ L NL DS+ + ++F+  + L  L   M+    D D+   IA IFSKLT     C  +        L +N + K+   Q++VVR  +  GN+   + + R+         +  + + + F+   L   +      E   + +   E EDVL+KL RV+AN++I      + + N  ++ ++L  LE    L   +EL+IN +AT+NN+S++   +SI+           L ++++ N D  +EA+R  GN +Q  D    +V+    + ++ LLD+   D+ F  CGVL+N+ VD+  R ++K
Sbjct:  268 FWNTRIVPILRELE---KEENIETVCAACTQLHHALEEGNMLGNKFK----GRSILLKTLCKLVDVGSDSLSLKLAKIILALKVSRKNLLNVCKLIFKISRNEKNDSLIQNDSILESLLEVLRSEDLQTNMEAFLYCMGSIKFISGNLGFLNEMISKGAVEILINLIKQINENIKK--CGTFLPNSGHLLVQVTATLRNLVDSSLVRSKFLNISALPQLCTAMEQYKGDKDVCTNIARIFSKLTSYRDCCTALASYSRCYALFLNLINKYQKKQDLVVRVVFILGNLTAKNNQAREQFSKEKGSIQTLLSLFQTFHQLDLHSQKPVGQRGEQHRAQRPPSEAEDVLIKLTRVLANIAIHPGVGPVLAANPGIVGLLLTTLEY-KSLDDCEELVINATATINNLSYYQVKNSIIQDKKLYIAELLLKLLVSNNMDGILEAVRVFGNLSQDHDVCDFIVQNNVHRFMMALLDAQHQDICFSACGVLLNLTVDKDKRVILK 755

The following BLAST results are available for this feature:

BLAST of TCONS_00062389-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062389-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARMC2	9.761e-54	27.51	Armadillo repeat-containing protein 2 OS=Homo sapi...	[more]

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TCONS_00062389-protein (polypeptide) - C. hemisphaerica