TCONS_00062435-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062435-protein
Unique NameTCONS_00062435-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length191

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062435-protein ID=TCONS_00062435-protein|Name=TCONS_00062435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MDYKEEQIGEIEALEAIYSEELDIISDDPHTLDVFVCGSNEETNDDTKVT
VSATIRFTMVETYPDASPLMEIMENTDNLTEELSEALIARLEEEATENLG
CVMIFTLVSAAQDYMLQLVEDIKNGIEEEKKRKREEELRLEELKYKGTPV
TLENFLAWKVRFDEEMIACGRRKITVKEIKKDKLTXALMKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039106XLOC_039106Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062435TCONS_00062435Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006575RWD-domain
IPR016135UBQ-conjugating_enzyme/RWD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 116..146
IPR006575RWD domainSMARTSM00591RWD2001bcoord: 9..118
e-value: 1.2E-17
score: 74.6
IPR006575RWD domainPFAMPF05773RWDcoord: 5..114
e-value: 1.9E-18
score: 66.8
IPR006575RWD domainPROSITEPS50908RWDcoord: 9..118
score: 22.93
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10coord: 1..128
e-value: 2.7E-25
score: 88.2
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 2..115

Blast
[Close]
BLAST of TCONS_00062435-protein vs. Swiss-Prot (Human)
Match: RWDD1 (RWD domain-containing protein 1 OS=Homo sapiens GN=RWDD1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 7.289e-32
Identity = 77/188 (40.96%), Postives = 117/188 (62.23%), Query Frame = 0 
Query:    2 DYKEEQIGEIEALEAIYSEELDIISDDPHTLDVFV---CGSNEETNDDTKVTVSATIRFTMVETYPDASPLMEIMENTDNLTEELSEALIARLEEEATENLGCVMIFTLVSAAQDYMLQLVEDIKNGIEEEKKRKREEELRLEELKYKGTPVTLENFLAWKVRFDEEMIACGRRKITVKE-IKKDKLT 185
            DY EEQ  E+EALE+IY +   ++S++P +  + V    G N+ET       V  T++FT  E YPD +PL EI  + +NL +     ++  L  +A ENLG VMIFTLV+A Q+ + ++V+ IK   EEEKK+K +E    E+  + GTPVT+ENFL WK +FD E++   ++++  +E   K+KL+
Sbjct:    3 DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDET-------VQTTLKFTYSEKYPDEAPLYEIF-SQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAGKNKLS 182
The following BLAST results are available for this feature:
BLAST of TCONS_00062435-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RWDD17.289e-3240.96RWD domain-containing protein 1 OS=Homo sapiens GN... [more]
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