TCONS_00062572-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062572-protein
Unique NameTCONS_00062572-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062572-protein ID=TCONS_00062572-protein|Name=TCONS_00062572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MKHKKTRCSKKYKSIIRAVSIIDSPYLVETPHEVSEFGNTVCKEGSFPCR
KATDDVGNSWVIRCCAGYVIDVAEMMFDYLGYDWTLYLVPDGFTNYNDVT
DCVWNGLVDELISDRADVALAPLTATSHRIRVIDFTEHIITTNIAVVSRN
KPEELEFINWEFLKSLDWTLLLALLITLLIVCSALFTVEWLMRKMMRNFK
KTGRYPTREAFSYGAGLTFQRDLAGKTPNRWATRIIAISYAVALTIIMST
YTANLTATNIADATNDFKGLKDEKVHFDPLIHT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039203XLOC_039203Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062572TCONS_00062572Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 53..269
e-value: 3.1E-4
score: -46.9
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 172..269
e-value: 7.0E-11
score: 42.1
NoneNo IPR availableGENE3D3.40.190.10coord: 40..166
e-value: 4.3E-17
score: 61.5
NoneNo IPR availableGENE3D1.10.287.70coord: 167..276
e-value: 8.8E-11
score: 40.9
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 64..151
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 65..150
e-value: 1.9E-17
score: 63.4

Blast
[Close]
BLAST of TCONS_00062572-protein vs. Swiss-Prot (Human)
Match: NMD3B (Glutamate receptor ionotropic, NMDA 3B OS=Homo sapiens GN=GRIN3B PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.313e-24
Identity = 67/222 (30.18%), Postives = 109/222 (49.10%), Query Frame = 0 
Query:   63 RCCAGYVIDVAEMMFDYLGYDWTLYLVPDGFTNYNDVTDCVWNGLVDELISDRADVALAPLTATSHRIRVIDFTEHIITTNIAVVSRNKPEELEFINWEFLKSLDWTLLLALLITLLIVCSALFTVEWLMRKMMRNFKKTGRYPTREA-FSYGAGLT------FQRDLAGKTPNRWATRIIAISYAVALTIIMSTYTANLTATNIADAT-NDFKGLKDEKVH 276
            +CC GY ID+ E + +   +D+ LYLV DG   Y  + D  W GLV +L++ RA +A+   +  S R +V+DFT    +T++ ++ R +          F+  L W+  L +   L +    L   EW        +  T R   R   FSY + L       F+R ++ KTP     R++   +A+   +++S+YTANL A  + D T  +  G+ D K+H
Sbjct:  474 KCCYGYCIDLLERLAEDTPFDFELYLVGDG--KYGALRDGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRARDTASPI--GAFMWPLHWSTWLGVFAALHLTALFLTVYEW-----RSPYGLTPRGRNRSTVFSYSSALNLCYAILFRRTVSSKTPKCPTGRLLMNLWAIFCLLVLSSYTANLAAVMVGDKTFEELSGIHDPKLH 686
The following BLAST results are available for this feature:
BLAST of TCONS_00062572-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3B1.313e-2430.18Glutamate receptor ionotropic, NMDA 3B OS=Homo sap... [more]
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