TCONS_00062626-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062626-protein
Unique NameTCONS_00062626-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length150

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062626-protein ID=TCONS_00062626-protein|Name=TCONS_00062626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
ARIKKPITCKIRVYESIEKTVEYAKRLERAGAKIITVHGRRREQRGPLTG
IASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSAEGALY
NPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMWQKCLDNFPE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039246XLOC_039246Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062626TCONS_00062626Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001269tRNA_hU_synthase
IPR013785Aldolase_TIM
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008033 tRNA processing
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001269tRNA-dihydrouridine synthasePFAMPF01207Duscoord: 3..121
e-value: 4.9E-32
score: 111.1
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 1..109
e-value: 4.7E-28
score: 97.7
NoneNo IPR availableCDDcd02801DUS_like_FMNcoord: 1..107
e-value: 2.35071E-44
score: 146.1
NoneNo IPR availableSUPERFAMILY51395FMN-linked oxidoreductasescoord: 3..142

Blast
[Close]
BLAST of TCONS_00062626-protein vs. Swiss-Prot (Human)
Match: DUS1L (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 6.679e-60
Identity = 83/144 (57.64%), Postives = 113/144 (78.47%), Query Frame = 0 
Query:    2 RIKKPITCKIRVYESIEKTVEYAKRLERAGAKIITVHGRRREQRGPLTGIASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSAEGALYNPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMWQKCL 145
            ++  P+TCKIRV+  I+KTV YA+ LE+AG +++TVHGR +EQ+GPL+G ASW+HIKAV++AV++PVFANGNIQ L+DVE+C+  T V  VMSAEG L+NPA+F GR P  WE+ ++YL    ++P  LSYVR HLF++W   L
Sbjct:  139 KLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTL 282
The following BLAST results are available for this feature:
BLAST of TCONS_00062626-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS1L6.679e-6057.64tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-li... [more]
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