TCONS_00063191-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063191-protein
Unique NameTCONS_00063191-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063191-protein ID=TCONS_00063191-protein|Name=TCONS_00063191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MEQIKKKMAILREKLEKAEERSKKAEDELQNSNNKAEESETEVGRLQKEL
GNLEDELDTSETKLAKITARLHEAEKQADESERARRVLEDRGQTDDDRLA
KLQAEYEDVVSKNADVEDRYSQISSEIEDLERHLEDEEQKAVQAEERVKH
LDNEVVVVGNSLKAMEISENQASARENQYTTKLQEMSTRYQEAESRASKY
EDHSKELESTLDDLQDKLEEERNLYDKVKGDLDNLLAEIQNLNV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039594XLOC_039594Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063191TCONS_00063191Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000533Tropomyosin
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 176..244
NoneNo IPR availableCOILSCoilCoilcoord: 1..91
NoneNo IPR availableCOILSCoilCoilcoord: 99..154
NoneNo IPR availableGENE3D1.20.5.340coord: 1..80
e-value: 3.9E-12
score: 45.6
NoneNo IPR availableGENE3D1.20.5.340coord: 162..244
e-value: 7.0E-5
score: 22.1
NoneNo IPR availableGENE3D1.20.5.340coord: 86..161
e-value: 2.4E-5
score: 24.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..96
NoneNo IPR availableSUPERFAMILY57997Tropomyosincoord: 3..241
IPR000533TropomyosinPRINTSPR00194TROPOMYOSINcoord: 103..131
score: 9.41
coord: 133..156
score: 30.38
coord: 78..98
score: 51.87
coord: 189..214
score: 41.04
coord: 42..59
score: 34.41
IPR000533TropomyosinPFAMPF00261Tropomyosincoord: 6..241
e-value: 1.5E-47
score: 161.9

Blast
[Close]
BLAST of TCONS_00063191-protein vs. Swiss-Prot (Human)
Match: TPM2 (Tropomyosin beta chain OS=Homo sapiens GN=TPM2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.880e-24
Identity = 74/239 (30.96%), Postives = 147/239 (61.51%), Query Frame = 0 
Query:    4 IKKKMAILREKLEKAEERSKKAEDELQNSNNKAEESETEVGRLQKELGNLEDELDTSETKLAKITARLHEAEKQADESERARRVLEDRGQTDDDRLAKLQAEYEDVVSKNADVEDRYSQISSEIEDLERHLEDEEQKAVQAEERVKHLDNEVVVVGNSLKAMEISENQASARENQYTTKLQEMSTRYQEAESRASKYEDHSKELESTLDDLQDKLEEERNLYDKVKGDLDNLLAEIQNL 242
            ++KK+    +++EK  E  K+A+++L+ +  KA ++E +V  L + +  +E+ELD ++ +LA    +L EAEK ADESER  +V+E+R   D++++   + + ++      D + +Y +++ ++  LE  LE  E++A  AE +   L+ E+ +V N+LK++E   ++ S +E++Y  +++ +  + +EAE+RA   E    +LE T+DDL+D++  ++  Y  +  +LDN L +I +L
Sbjct:   46 LQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
The following BLAST results are available for this feature:
BLAST of TCONS_00063191-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPM23.880e-2430.96Tropomyosin beta chain OS=Homo sapiens GN=TPM2 PE=... [more]
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