TCONS_00063894-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063894-protein
Unique NameTCONS_00063894-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063894-protein ID=TCONS_00063894-protein|Name=TCONS_00063894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
CFGHVLSTRFFFDFKISLFFPPKKYSLTSLFFEMALQQHEDDKILEVETA
SQLFSRLCGKPVLSTLENKLFKEDCHNKLAEISGPISSGKTEILLHIILN
TLLPKTFKDTSVNGIEGKVIFIDTSYKFSVLRLVTLLEQRLLNKLDHSNV
DSLISAQFVKDCLSRFYKISCSSSKELFVSLLALEPFLQATSDVYLLVID
DLYSYHWIDSLEAGHNKFSSNYLKSVVEILKQFTREYDINVVFTRSDILP
SIVLNNVAISKYTIQIKDQKQNLNIISKKTGNGSSCFHYKLGYKGTTFL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040055XLOC_040055Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063894TCONS_00063894Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008094 DNA-dependent ATPase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 78..245
e-value: 1.2E-8
score: 34.4
NoneNo IPR availableGENE3D3.40.50.300coord: 76..299
e-value: 2.2E-13
score: 49.9
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 55..248
score: 15.842
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 77..245

Blast
[Close]
BLAST of TCONS_00063894-protein vs. Swiss-Prot (Human)
Match: XRCC2 (DNA repair protein XRCC2 OS=Homo sapiens GN=XRCC2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.959e-31
Identity = 69/207 (33.33%), Postives = 112/207 (54.11%), Query Frame = 0 
Query:   47 VETASQLFSRLCGKPVLSTLENKLFKED---CHNKLAEISGPISSGKTEILLHIILNTLLPKTFKDTSVNGIEGKVIFIDTSYKFSVLRLVTLLEQRLLNKLDHSNVDSLISAQFVKDCLSRFYKISCSSSKELFVSLLALEPFLQATSDVYLLVIDDLYSYHWIDSLEAGHN-KFSSNYLKSVVEILKQFTREYDINVVFTRSDIL 249
             E+ ++L +RL G+  L  +E  LF ++    H  + E  GP  +GKTE+L H+    +LPK     S  G+E +V+FIDT Y F +LRLVT+LE RL          S  S + +K CL RF+ + CSSS  L ++L +LE    +   + LL++D L +++WID +  G +     + L+   + L++   +Y + +  T   I+
Sbjct:    8 AESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYHLTARCILPK-----SEGGLEVEVLFIDTDYHFDMLRLVTILEHRL----------SQSSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQESTLRKCSQCLEKLVNDYRLVLFATTQTIM 199
The following BLAST results are available for this feature:
BLAST of TCONS_00063894-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XRCC23.959e-3133.33DNA repair protein XRCC2 OS=Homo sapiens GN=XRCC2 ... [more]
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