TCONS_00064034-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064034-protein
Unique Name	TCONS_00064034-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1312

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064034-protein ID=TCONS_00064034-protein|Name=TCONS_00064034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1312bp
MAKIEKMKIMGIRSYSPEEGSVIEFQTPLTLIVGQNGCGKTTVIESLSYN
ISGNLPPGCKSATSFINDPKIAGESQVKGQVKLQFRDITGNQLISTRSCQ
SIQKAKKMESKAIEGVIQKINDDGKAVSLSSRCTDLTKEMISRLGVSKAV
LDNVIFCHQENSYWPLGEGKSLKEKFDAIFAATRYIKALESIRNLRKEQG
GEVKTYASELGYLTETKNKAAEIKKDLSKAESQVLVTKDDIQKITRESKP
IEDQLEELDKVSNDIMHINTNIVKMKSRKTELEKTIGELEQTIDQRFQGS
FEELKLKQSDFASRLAKKETDLHDLKTRIGRIDIELNSLEERRTKLMQVQ
GRLEKETADHQALVKGRDDLINVLAKDFEISGYNSSSYEPHEADTFINKL
KDVYIKSVEEGKKTKAHYKEELQEADKTIMKYQKSLNSYESIMDQKQKMI
KTNQTKINDLSSQLNRLAASENRIHNIEKQLRQKETELDEYRTDNDTERL
ENEIKELSRDKKDKESVLVTLKDEENLMLQNSAAQTKISMMEDDKAQKKD
QFDGILRNRQGLLEDLFDTRPPAEELKPKLKSFLQRCQADLRKQTDELQK
YHNKVTKLESERNLAVKEQNKKEEKLNFSSQRVHDVCQENDYNEFRELVR
QQVQSYHKNLSELSAYEKIYQKYLLDLSDDSQTGCPLCHRDFDSKRDIRN
LINELETKIEDVPGTREALQQTLEQQKDLEQSILDIAPEKNQMDTLNEEL
PILEEKIRKLNLDIQKEKESLEKISTAKKATDQKEKNARTVEADVIKIDD
LLYDLKDLDTSLNMERSKLKGVTDGRSMQSIRSEVQEKEVVIGSLSRKID
QKRDHLMEGQRKLSELEREVNQLNSTQLSLKTELQKQTQLQHQKAELTST
NQSYEREIREASGQLQPIRDQLELAKEDKRDKEMVLETFNNDVKDKLNKI
KSKGDRIREMVGSIQRYLDEGRDTALEDNQEQMRTVETRKKTKTDEKRAK
TADYNDINEEISKQSILKREMDDNVKIMEKEREINDIEKKITDYRKELNQ
YGNFQDFQKDRGTLQEKLDEFRKRKAGLQGRLQGFEDEVKRCQRDLASSM
YADADLKHCQKVIEMKTTELASQDLDKYYKALDRAIMRYHSLKLADINKI
IKEYWVKTYQGGDIDTIEITAETDEDGSGASKSRRSYNYRVIMVKGATSL
DMRGRCSAGQKVIASIIIRLALAETFCLNCGILALDEPTTNLDEQNIASL
AHSLREIIDHRRQQKNFQLVIITHDEDFVQALGRSDYVENYFKVYKNETQ
HSKIKKMNFREL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040148	XLOC_040148	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064034	TCONS_00064034	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004584	Rad50_eukaryotes
IPR013134	Zn_hook_RAD50
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0016887	ATPase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0030870	Mre11 complex
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0000723	telomere maintenance
GO:0006281	DNA repair

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0030870	Mre11 complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016887	ATPase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 976..996
None	No IPR available	COILS	Coil	Coil	coord: 408..442
None	No IPR available	COILS	Coil	Coil	coord: 322..356
None	No IPR available	COILS	Coil	Coil	coord: 1027..1047
None	No IPR available	COILS	Coil	Coil	coord: 887..914
None	No IPR available	COILS	Coil	Coil	coord: 849..883
None	No IPR available	COILS	Coil	Coil	coord: 213..233
None	No IPR available	COILS	Coil	Coil	coord: 460..524
None	No IPR available	COILS	Coil	Coil	coord: 584..625
None	No IPR available	COILS	Coil	Coil	coord: 1054..1095
None	No IPR available	COILS	Coil	Coil	coord: 272..292
None	No IPR available	COILS	Coil	Coil	coord: 743..777
None	No IPR available	GENE3D	3.90.20.10		coord: 243..416 e-value: 6.3E-8 score: 32.0
None	No IPR available	GENE3D	1.10.287.620		coord: 821..969 e-value: 1.8E-6 score: 27.0
None	No IPR available	GENE3D	1.20.5.340		coord: 417..531 e-value: 0.0028 score: 16.9
None	No IPR available	GENE3D	3.40.50.300		coord: 1..195 e-value: 6.1E-19 score: 68.1
None	No IPR available	GENE3D	1.10.287.510		coord: 638..748 e-value: 4.2E-5 score: 23.3
None	No IPR available	GENE3D	3.40.50.300		coord: 970..1312 e-value: 2.2E-19 score: 69.3
None	No IPR available	PFAM	PF13476	AAA_23	coord: 6..233 e-value: 2.2E-26 score: 93.5
None	No IPR available	CDD	cd03240	ABC_Rad50	coord: 1184..1303 e-value: 1.76999E-40 score: 148.909
None	No IPR available	CDD	cd03240	ABC_Rad50	coord: 4..166 e-value: 7.55693E-27 score: 109.619
IPR004584	DNA repair protein Rad50, eukaryotes	TIGRFAM	TIGR00606	TIGR00606	coord: 2..1308 e-value: 1.8E-263 score: 875.4
IPR013134	RAD50, zinc hook	PFAM	PF04423	Rad50_zn_hook	coord: 664..713 e-value: 1.1E-9 score: 37.9
IPR013134	RAD50, zinc hook	PROSITE	PS51131	ZN_HOOK	coord: 639..738 score: 9.356
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..318
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 24..55 coord: 1087..1281

Blast

[Close]

BLAST of TCONS_00064034-protein vs. Swiss-Prot (Human)
Match: RAD50 (DNA repair protein RAD50 OS=Homo sapiens GN=RAD50 PE=1 SV=1)

HSP 1 Score: 795.038 bits (2052), Expect = 0.000e+0
Identity = 477/1323 (36.05%), Postives = 793/1323 (59.94%), Query Frame = 0

Query:    1 MAKIEKMKIMGIRSYSPEEG--SVIEFQTPLTLIVGQNGCGKTTVIESLSYNISGNLPPGCKSATSFINDPKIAGESQVKGQVKLQFRDITGNQLISTRSCQSIQKAKKMESKAIEGVIQKINDDGKAVSLSSRCTDLTKEMISRLGVSKAVLDNVIFCHQENSYWPLGEGKSLKEKFDAIFAATRYIKALESIRNLRKEQGGEVKTYASELGYLTETKNKAAEIKKDLSKAESQVLVTKDDIQKITRESKPIEDQLEELDKVSNDIMHINTNIVKMKSRKTELEKTIGELEQTIDQRFQGSFEELKLKQSDFASRLAKKETDLHDLKTRIGRIDIELNSLEERRTKLMQVQGRLEKETADHQALVKGRDDLINVLAKDFEISGYNSSSYEPHEADTFINKLKDVYIKSVEEGKKTKAH-----YKEELQEADKTIMKYQKSLNSYESIMDQKQKMIKTNQTKINDLSSQLNRLAASENRIHNIEKQLRQKETELDEYRTDNDTERLENEIKELSRDKKDKESVLVTLKDEENLMLQNSAAQTKISMMEDDKAQKKDQFDGILRNRQGLLEDLFDTRPPAEELKPKLKSFLQRCQADLRKQTDELQKYHNKVTKLESERNLAVKEQNKKEEKLNFSSQRVHDVCQENDYNEFRELVRQQVQSYHKNLSELSAYEKIYQKYLLDLSDDSQTGCPLCHRDFDSKRDIRNLINELETKIEDVPGTREALQQTLEQQKDLEQSILDIAPEKNQMDTLNE-ELPILEEKIRKLNLDIQKEKESLEKISTAKKATDQKEKNARTVEADVIKIDDLLYDLKDLDTSLNMERSKLKGVTDGRSMQSIRSEVQEKEVVIGSLSRKIDQKRDHLMEGQRKLSELEREVNQLNSTQLSLKTELQKQTQLQHQKAELTSTNQSYEREIREASGQLQPIRDQLELAKEDKRDKEMVLETFNNDVKDKLNKIKSKGDRIREMVGSIQRYLDEGRDTALEDNQEQMRTVETRKKTKTDEKRAKTADYNDINEEISKQSILKREMDDNVKIMEKEREINDIEKKITDYRKE-LNQYGNFQDFQ--KDRGTLQEKLDEFRKRKAGLQGRLQGFEDEVKRCQRDLASSMYADADLKHCQKVIEMKTTELASQDLDKYYKALDRAIMRYHSLKLADINKIIKEYWVKTYQGGDIDTIEITAETDEDGSGASKSRRSYNYRVIMVKGATSLDMRGRCSAGQKVIASIIIRLALAETFCLNCGILALDEPTTNLDEQNIASLAHSLREIIDHRRQQKNFQLVIITHDEDFVQALGRSDYVENYFKVYKNETQHSKIKKMNFREL 1312
            M++IEKM I+G+RS+  E+    +I F +PLT++VG NG GKTT+IE L Y  +G+ PPG K  T F++DPK+A E+ V+ Q++LQFRD+ G  +   RS    QK+KK E K +EGVI +    G+ VSLSS+C ++ +EMIS LGVSKAVL+NVIFCHQE+S WPL EGK+LK+KFD IF+ATRYIKALE++R +R+ QG +VK Y  EL YL + K KA EI+  ++  E+Q+  +K+ ++    E  P++++L+E++   + IM ++  I  + SRK ++EK   ELE+ +++ FQG+ E+L     +    + +KE  L D    + +++ E   L + +++L+  QGRL+ +   HQ  ++ RD LI  LA   E+ G+    +   +   F +KL    ++  +EG+   A+     + E+     K I + +        I++ K +++   Q ++ ++  +L +L  S +RI  ++++L + E EL +   +++ E L+ E+  L  +K D +  L  L  E   +  ++  +T++ M+  DKA K +Q   I       L  L    P     K +L+ +L     ++ +  D L K + ++   E  +N    E  +KEE+L+    ++ DVC   D+    + ++++++   K  + L+    +Y +++  L+D++Q+ CP+C R F ++ +++ +I++L++K+   P   ++ +  L++++     +L + P +  +  L E E+P L  K++ +N DIQ+ K  +E+  T       +E++A+    DV  ++    +LKD++  +  + +KL+G+   R++Q +  E QEK+  + ++S KI+  R  + + Q ++  L+   N+L S +L + T LQ++ QL+ Q  EL++  QS  REI++A  Q+ P+   LE  +++K +      T N   +DKLN IK K   I   +  I+ Y+ +G+D   +  + ++  V  +       K     D   + ++I  Q I +R + DN+ +    R+ N+  K++ + RK+ L + G  Q  Q   +   L+E +D  ++      GR +G+E+E+   +++L    + DA+ K+ + +I M+TTEL ++DLD YYK LD+AIM++HS+K+ +INKII++ W  TY+G DI+ IEI ++ DE+ S AS  RR+YNYRV+M+KG T+LDMRGRCSAGQKV+AS+IIRLALAETFCLNCGI+ALDEPTTNLD +NI SLAH+L EII  R QQ+NFQL++ITHDEDFV+ LGRS+YVE ++++ KN  Q S+I K +   L
Sbjct:    1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNT-FVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKKTEFKTLEGVITRTKH-GEKVSLSSKCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVKEYQMELKYLKQYKEKACEIRDQITSKEAQLTSSKEIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALDSRKKQMEKDNSELEEKMEKVFQGTDEQLNDLYHNHQRTVREKERKLVDCHRELEKLNKESRLLNQEKSELLVEQGRLQLQADRHQEHIRARDSLIQSLATQLELDGFERGPFSERQIKNF-HKL----VRERQEGEAKTANQLMNDFAEKETLKQKQIDEIRDKKTGLGRIIELKSEILSKKQNELKNVKYELQQLEGSSDRILELDQELIKAERELSKAEKNSNVETLKMEVISLQNEKADLDRTLRKLDQEMEQLNHHTTTRTQMEMLTKDKADKDEQIRKIKSRHSDELTSLLGYFPN----KKQLEDWLHSKSKEINQTRDRLAKLNKELASSEQNKNHINNELKRKEEQLSSYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGIDLDRTVQQVNQEKQEKQHKLDTVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQSLYREIKDAKEQVSPLETTLEKFQQEKEELINKKNTSNKIAQDKLNDIKEKVKNIHGYMKDIENYIQDGKDDYKKQKETELNKVIAQLSECEKHKEKINEDMRLMRQDIDTQKIQERWLQDNLTL----RKRNEELKEVEEERKQHLKEMGQMQVLQMKSEHQKLEENIDNIKRNHNLALGRQKGYEEEIIHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIRSDADENVS-ASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSL 1307

The following BLAST results are available for this feature:

BLAST of TCONS_00064034-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064034-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RAD50	0.000e+0	36.05	DNA repair protein RAD50 OS=Homo sapiens GN=RAD50 ...	[more]

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TCONS_00064034-protein (polypeptide) - C. hemisphaerica