TCONS_00064147-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064147-protein
Unique Name	TCONS_00064147-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	330

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064147-protein ID=TCONS_00064147-protein|Name=TCONS_00064147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
ILSLGIIFGNTIVIKTYFQNTRLQVAKHFYIVSLAIADLLVALVPLNIYT
GYLVHGKWPFGGKVCSAWLSLDHILFTISNISVIAIAVERFLCICFPIYH
RINFKPKLTKTLIGLTWVASIFIWAPAIIIYPRVNKVKFDPYRCKIIFYQ
YDVALTITVVVFSYIIPVIILVSVYVAISMRLLKLRKNRVENMKKNLNSN
PSQIEIPAESQFSVSRAVTSGICNVTSGDVDHKDENRHHVTKKDRVKAER
RTLKLLFFIALAFILSWMPYHLTVIIEASTDYDFPDQLWNFCYIIGRLNS
FLNPICYAFGNSKFKQGFKKSLGLSKRKKQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040221	XLOC_040221	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064147	TCONS_00064147	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 180..200
None	No IPR available	GENE3D	1.20.1070.10		coord: 1..330 e-value: 5.4E-70 score: 235.4
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 236..328 coord: 2..187
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 27..48 score: 33.52 coord: 108..129 score: 23.44 coord: 252..276 score: 26.87 coord: 289..315 score: 30.34 coord: 156..179 score: 21.82 coord: 72..94 score: 25.42
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 9..307 e-value: 3.5E-52 score: 177.2
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 78..94
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 9..307 score: 40.372

Blast

[Close]

BLAST of TCONS_00064147-protein vs. Swiss-Prot (Human)
Match: 5HT1B (5-hydroxytryptamine receptor 1B OS=Homo sapiens GN=HTR1B PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.015e-29
Identity = 95/334 (28.44%), Postives = 157/334 (47.01%), Query Frame = 0

Query:    1 ILSLGIIFGNTIVIKTYFQNTRLQVAKHFYIVSLAIADLLVALVPLNIYTGYLVHGKWPFGGKVCSAWLSLDHILFTISNISVIAIAVERFLCICFPIYHRINFKPKLTKTLIGLTWVASIFIWAPAIIIYPRVNKVKFDPYRCKIIFYQYDVALTITVVVFSYIIPVIILVS----VYVAISMRLLKLRKNRVENMKKNLNSNPSQIEIPAESQFSVSRAVTSGICNV--TSGDVDHKDENRHHVT------KKDRVKAERRTLKLLFFIALAFILSWMPYH-LTVIIEASTDYD-FPDQLWNFCYIIGRLNSFLNPICYAFGNSKFKQGFKK 320
            +++L     N  VI T ++  +L    ++ I SLA+ DLLV+++ + I T Y V G+W  G  VC  WLS D    T S + +  IA++R+  I   + +     PK    +I L WV SI I  P    + R  K + +   C  +     +  T+   V ++  P ++L++    +YV    R+LK   NR     K L    +Q+   +    S   ++ S + +V   SG   + ++ +  V+      KK     ER+  K L  I  AFI+ W+P+  +++++    D   F   +++F   +G LNS +NPI Y   N  FKQ F K
Sbjct:   58 LITLATTLSNAFVIATVYRTRKLHTPANYLIASLAVTDLLVSILVMPISTMYTVTGRWTLGQVVCDFWLSSDITCCTASILHLCVIALDRYWAITDAVEYSAKRTPKRAAVMIALVWVFSISISLPP--FFWRQAKAEEEVSEC--VVNTDHILYTVYSTVGAFYFPTLLLIALYGRIYVEARSRILKQTPNRT---GKRLTR--AQLITDSPGSTSSVTSINSRVPDVPSESGSPVYVNQVKVRVSDALLEKKKLMAARERKATKTLGIILGAFIVCWLPFFIISLVMPICKDACWFHLAIFDFFTWLGYLNSLINPIIYTMSNEDFKQAFHK 382

The following BLAST results are available for this feature:

BLAST of TCONS_00064147-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064147-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
5HT1B	3.015e-29	28.44	5-hydroxytryptamine receptor 1B OS=Homo sapiens GN...	[more]

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TCONS_00064147-protein (polypeptide) - C. hemisphaerica