TCONS_00064293-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064293-protein
Unique NameTCONS_00064293-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064293-protein ID=TCONS_00064293-protein|Name=TCONS_00064293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MEAREYIYVYTLKRERRKNLVHFFSGFLTFYNKPQFLFYFFHIFQSPLLV
KVQFTYFKEDEEIKRLEPLLPKPSQKRRFQKKHNTNQKSPLNNIQLITET
VNKLPDSKVVQYTSVPPERAEKPCDINISFVHEPIYIAGRYNKYSRELSQ
TPWLIDGERKTESSVQELICDRLIKATGASEVKFMSSGREDCDVRMLGKG
RPFVAGLVNPKTTNLPADEVRFLEREINQSTELVGVRDLQVTDKESLVIL
KAGENEKKKCYSAKIWCPEPIDDEQLDGINTTKDLKIGQKTPLRVLHRRP
LCVRERTIYSMNIQRINKEEDTAHHYQLQLKTEAGTYIKEFVHGDLGRTI
PSMCTLMDAPFDILELDVDEVQLDWPPKIEST
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040312XLOC_040312Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064293TCONS_00064293Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020103Pseudouridine synthase, catalytic domainSUPERFAMILY55120Pseudouridine synthasecoord: 255..353

Blast
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BLAST of TCONS_00064293-protein vs. Swiss-Prot (Human)
Match: PUS10 (Putative tRNA pseudouridine synthase Pus10 OS=Homo sapiens GN=PUS10 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 7.414e-93
Identity = 141/285 (49.47%), Postives = 190/285 (66.67%), Query Frame = 0 
Query:   97 ITETVNKLPDSKVVQYTSVPPERAEKPCDI-NISFVHEPIYIAGRYNKYSRELSQTPWLIDGERKTESSVQELICDRLIKATGASEVKFMSSGREDCDVRMLGKGRPFVAGLVNPKTTNLPADEVRFLEREINQSTELVGVRDLQVTDKESLVILKAGENEKKKCYSAKIWCPEPIDDEQLDGINTTKDLKIGQKTPLRVLHRRPLCVRERTIYSMNIQRINKEEDTAHHYQLQLKTEAGTYIKEFVHGDLGRTIPSMCTLMDAPFDILELDVDEVQLDWPPKIE 380
            + + +NK+ +   ++    PP   +  C +  I   H  +++AGRYNKYSR L QTPW+IDGERK ESSV+ELI D L+    A    F SSGRED DVR LG GRPF   LVNP   +  + E++ L+++IN S+  + VRDLQ+  +E++  +K GE EK K YSA IW  + I  + ++ +N  KDLKI QKTPLRVLHRRPL VR R I+ M  Q +++     HH++L LKT+AGTYIKEFVHGD GRT P++ +LM+   DILELDV+ V +DWPP ++
Sbjct:  249 VMKALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNKIQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEFLNDIKDLKIDQKTPLRVLHRRPLAVRARVIHFMETQYVDE-----HHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVDWPPALD 528
The following BLAST results are available for this feature:
BLAST of TCONS_00064293-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PUS107.414e-9349.47Putative tRNA pseudouridine synthase Pus10 OS=Homo... [more]
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