TCONS_00064470-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064470-protein
Unique Name	TCONS_00064470-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	487

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064470-protein ID=TCONS_00064470-protein|Name=TCONS_00064470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp
MPEVCLKDCQAWRDVGLTMTTTSNEACKLFDDVITQYITWTESPDGMENT
VVKLLESDSNFMMGQALSIGLDMMGTGRALHLDKELAEQINKFESDFNKS
EITPREKLHCQSVVYFAKGEYTKACESWEEILKVXQSVVYFAKGEYTKAC
ESWEEILKVYPKDSLAIKFAHDSYFYLGDSVKIRDSVDRVLPYWKSSDPL
YGYLKGMLAFGLEETYRYEEAQKSSEEALSLNPTDCWATHAKAHCFEMTG
RFNQGIEFLKDTENDWAKGRMLACHNYWHWALYHIERGDYETALGIYDHQ
VEERSKSSGAMLDMVDAASLLQRFEMQGVNVGDRWKEIYELALPHINDHI
TVFNDFHMTMAFLGCGKTDVASRYMKSLRDYCAHHSSYSRDLFHKMGVDL
CDGLIAFSEDRFDAAVQLWYPLKDDVIGMGGSHAQRDVFDQLLLNACIDS
PKNEDRDLAQQMLSERKKKRENSPLTDRLMQKLLAKH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040432	XLOC_040432	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064470	TCONS_00064470	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom
IPR013026	TPR-contain_dom
IPR033891	TTC38

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 98..151 e-value: 7.8E-4 score: 18.6
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 152..420 e-value: 4.3E-17 score: 61.8
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 108..169 coord: 208..303
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 130..235 score: 9.025
IPR033891	Tetratricopeptide repeat protein 38	CDD	cd05804	StaR_like	coord: 58..444 e-value: 6.04955E-120 score: 357.364

Blast

[Close]

BLAST of TCONS_00064470-protein vs. Swiss-Prot (Human)
Match: TTC38 (Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 2.890e-140
Identity = 202/485 (41.65%), Postives = 296/485 (61.03%), Query Frame = 0

Query:    6 LKDCQAWRDVGLTMTTTSNEACKLFDDVITQYITWT--ESPDGMENTVVKLLESDSNFMMGQALSIGLDMMGTGRALHLDKELAEQINKFESDFNKSEITPREKLHCQSVVYFAKGEYTKACESWEEILKVXQSVVYFAKGEYTKACESWEEILKVYPKDSLAIKFAHDSYFYLGDSVKIRDSVDRVLPYWKSSDPLYGYLKGMLAFGLEETYRYEEAQKSSEEALSLNPTDCWATHAKAHCFEMTGRFNQGIEFLKDTENDWAKGRMLACHNYWHWALYHIERGDYETALGIYDHQVEERSKSSGAMLDMVDAASLLQRFEMQGVNVGDRWKEIYELALPHINDHITVFNDFHMTMAFLGCGKTDVASRYMKSLRDYCAHHSSYSRDLFHK-MGVDLCDGLIAFSEDRFDAAVQLWYPLKDDVIGMGGSHAQRDVFDQLLLNACIDSPKNEDRDLAQQMLSERKKKRENSPLTDRLMQKLLAKH 487
            L+DCQAW+D  L ++TTSNEACKLFD  +TQY+ WT  +S  G+E  + KL  +D  F+MG A++ GL ++GTG ++ LDKEL   +           +T RE+LH  +V  FA G + K                         ACE WE+IL+ +P D LA+KF+HD+YFYLG   ++RDSV R+ P+W    PL  Y+KG+ +FGL ET  Y++A+K ++EALS+NPTD W+ H  AH  EM      G+EF++ +E  W    MLACHNYWHWALY IE+G+YE AL IYD  +    +++ AMLD+VD+ S+L R +M+GV+VG RW+++  +A  H  DHI +FND H  MA LG          + +LRD         + L  + +G+ LC  L+   +   D  ++L  P++  ++ +GGS+AQRDVF+QLL++A ++   +  +++A+ +L ER   + NSPLT+RL++K    H
Sbjct:    7 LRDCQAWKDARLPLSTTSNEACKLFDATLTQYVKWTNDKSLGGIEGCLSKLKAADPTFVMGHAMATGLVLIGTGSSVKLDKELDLAVKTMVEISRTQPLTRREQLHVSAVETFANGNFPK-------------------------ACELWEQILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHSETFWKDSDMLACHNYWHWALYLIEKGEYEAALTIYDTHILPSLQANDAMLDVVDSCSMLYRLQMEGVSVGQRWQDVLPVARKHSRDHILLFNDAHFLMASLGAHDPQTTQELLTTLRDASESPGENCQHLLARDVGLPLCQALVEAEDGNPDRVLELLLPIRYRIVQLGGSNAQRDVFNQLLIHAALNCTSSVHKNVARSLLMERDALKPNSPLTERLIRKAATVH 466

The following BLAST results are available for this feature:

BLAST of TCONS_00064470-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064470-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TTC38	2.890e-140	41.65	Tetratricopeptide repeat protein 38 OS=Homo sapien...	[more]

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TCONS_00064470-protein (polypeptide) - C. hemisphaerica