TCONS_00064735-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064735-protein
Unique NameTCONS_00064735-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064735-protein ID=TCONS_00064735-protein|Name=TCONS_00064735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MKPQVPWKSCFNSWNTPNCREDNHKPKLEWSCPSSNGTWYNYTVATLPKN
SSLCNKFLVHEPTSPSIEFWERRVLQITNGLDESGDVQYELLICLVVAWI
LVFVCLFKGIKTSGKVVYFTATFPYIVMFILLIRGAILEGASEGIKYYLM
PSFDKLKDAKVWVAAATQIFYSLGIGFGSLIAFGSYNKVNNNIVRDAIAL
SLTNCMTSVFAGFVVFSVLGHMAHKSKLSIQKVATQGPGLIFVVYPEGLA
QMPVSTLWGVLFFFMILMIGLDTQFAMLEAVIVGLSDEYKVLRQHKTTFI
FVICLLALLFGISMVTQGGMYIFNIFNWQSGGVSLLILAFIEVCAISYGY
GADRFEKDLELILGRKPSRWWKICWKYLSPFVILATLISSLVQWKGISYN
GISYPVYGEVIGWFLALTSVIWIPLVALYKMKFSASGSICNRLRHLLTPN
MAELRQVALDNGLNTSFDANA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040602XLOC_040602Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064735TCONS_00064735Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000175Na/ntran_symport
Vocabulary: Molecular Function
TermDefinition
GO:0005328neurotransmitter:sodium symporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006836neurotransmitter transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006836 neurotransmitter transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005328 neurotransmitter:sodium symporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000175Sodium:neurotransmitter symporterPRINTSPR00176NANEUSMPORTcoord: 372..392
score: 34.89
coord: 116..133
score: 64.21
coord: 198..218
score: 49.88
coord: 332..352
score: 40.52
coord: 252..271
score: 52.3
IPR000175Sodium:neurotransmitter symporterPFAMPF00209SNFcoord: 3..431
e-value: 8.9E-147
score: 489.8
IPR000175Sodium:neurotransmitter symporterPROSITEPS50267NA_NEUROTRAN_SYMP_3coord: 39..436
score: 71.971
NoneNo IPR availableSUPERFAMILY161070SNF-likecoord: 64..431
coord: 3..19

Blast
[Close]
BLAST of TCONS_00064735-protein vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 390.578 bits (1002), Expect = 1.564e-130
Identity = 193/453 (42.60%), Postives = 287/453 (63.36%), Query Frame = 0 
Query:    5 VPWKSCFNSWNTPNCREDNHKPKLEWSCPSSNGTWYNYTVATLPKNSSLCNKFLVHEPTSPSIEFWERRVLQITNGLDESGDVQYELLICLVVAWILVFVCLFKGIKTSGKVVYFTATFPYIVMFILLIRGAILEGASEGIKYYLMPSFDKLKDAKVWVAAATQIFYSLGIGFGSLIAFGSYNKVNNNIVRDAIALSLTNCMTSVFAGFVVFSVLGHMAHKSKLSIQKVATQGPGLIFVVYPEGLAQMPVSTLWGVLFFFMILMIGLDTQFAMLEAVIVGLSDEY-KVLRQHKTTFIFVICLLALLFGISMVTQGGMYIFNIFNWQSG-GVSLLILAFIEVCAISYGYGADRFEKDLELILGRKPSRWWKICWKYLSPFVILATLISSLVQWKGISYNGISYPVYGEVIGWFLALTSVIWIPLVALYKMKFSASGSICNRLRHLLTPNMAELR 455
            +PWK C N WNT  C                              N S+ N       TS  +EFWER + Q+T+GLD+ G +++ L I L +AWILV+ C++KG+  +GKVVYF+AT+PYI++ IL  RG  L GA EGI +Y+ P+F KL D++VW+ AATQIF+S G+G GSLIA GSYN  +NN+ RD+I +   N  TS+FAGFV+FS++G MAH +K SI  VA  GPGL F+ YPE + Q+P+S LW +LFF M+LM+G+D+QF  +E  I  L DEY ++LR  +  FI  +C+++ L G+S +TQGG+Y+F +F++ S  G+SLL L F E  +IS+ YG +RF  +++ ++G +P  WWK+CW + +P ++    I S VQ   ++     +P +G+ +GW +AL+S++ IP    Y M  +  GS+  R++ ++ P+   +R
Sbjct:  159 LPWKQCDNPWNTDRCFS----------------------------NYSMVN---TTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMGNYVFPKWGQGVGWLMALSSMVLIPGYMAY-MFLTLKGSLKQRIQVMVQPSEDIVR 579
The following BLAST results are available for this feature:
BLAST of TCONS_00064735-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC6A11.564e-13042.60Sodium- and chloride-dependent GABA transporter 1 ... [more]
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