TCONS_00065030-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065030-protein
Unique NameTCONS_00065030-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065030-protein ID=TCONS_00065030-protein|Name=TCONS_00065030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MEKLTWFLVVGFGCLSVFNFVQYQEINSRFVELQQNSQGEKIRTRRDVTN
DENNNWSPFFDQQKLINFIQKQSNQTIYKEVNRILKHFTSNFPVEKFCKD
LSKCEREECGSGWTEYSGDCYAYINQKKTWDNAXSGWTEYSGDCYAYINQ
KKTWDNAESYCISKGGHLASIKSKQENDFVYGLTPGGHNNYWIGLSDKQV
EGSFTWWSDGKTATYTNFDSGQPNSSGNQDCVSFFEDAAEKWNDWGCSNS
YTFVCKIAQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040770XLOC_040770Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065030TCONS_00065030Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001304C-type lectin-likeSMARTSM00034CLECT_2coord: 133..256
e-value: 4.2E-33
score: 126.0
IPR001304C-type lectin-likePFAMPF00059Lectin_Ccoord: 150..256
e-value: 2.2E-22
score: 79.7
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 140..256
score: 24.679
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 22..134
e-value: 6.6E-7
score: 28.6
coord: 135..259
e-value: 2.1E-40
score: 137.8
IPR018378C-type lectin, conserved sitePROSITEPS00615C_TYPE_LECTIN_1coord: 231..255
NoneNo IPR availableCDDcd00037CLECTcoord: 144..257
e-value: 1.00856E-32
score: 116.18
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 101..134
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 135..257

Blast
[Close]
BLAST of TCONS_00065030-protein vs. Swiss-Prot (Human)
Match: CSPG2 (Versican core protein OS=Homo sapiens GN=VCAN PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 1.679e-24
Identity = 59/168 (35.12%), Postives = 82/168 (48.81%), Query Frame = 0 
Query:  100 DLSKCEREECGSGWTEYSG----DCY---AYINQ--KKTWDNAXSGWTEYSGDCYAYINQKKTWDNAESYCISKGGHLASIKSKQENDFVYGLTPGGHNNYWIGLSDKQVEGSFTWWSDGKTATYTNFDSGQPNS--SGNQDCVSFFEDAAEKWNDWGCSNSYTFVCK 256
            D  +C    C +G T   G     C    +Y+    ++  +    GW ++ G CY Y   ++TWD AE  C  +G HL SI S +E  FV  +   GH+  WIGL+DK  E  F  W+DG T  Y N+   QP+S  S  +DCV        +WND  C+   T+ CK
Sbjct: 3127 DFDECHSNPCRNGATCVDGFNTFRCLCLPSYVGALCEQDTETCDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAHLTSILSHEEQMFVNRV---GHDYQWIGLNDKMFEHDFR-WTDGSTLQYENWRPNQPDSFFSAGEDCVVIIWHENGQWNDVPCNYHLTYTCK 3290
The following BLAST results are available for this feature:
BLAST of TCONS_00065030-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSPG21.679e-2435.12Versican core protein OS=Homo sapiens GN=VCAN PE=1... [more]
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