TCONS_00065317-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00065317-protein
Unique Name	TCONS_00065317-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	368

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065317-protein ID=TCONS_00065317-protein|Name=TCONS_00065317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MANNSSNSSYFGGMESYPVDWSMPEKMTPQFKLGLSIYYSVLISIAVLFN
VILIGTICSRRKLLTVTNILVMNLAIGDLVTSILVVPFDIELLLRGIFPF
GKVMCAFSSMAFLLSLPSSVFCLLLLTMERFVSIVFPFHRIRYIRKRNTL
IAIGIAWAYSLLFAIIPLFSKEEVVVIWMEQCHFLYSYDYLYMQLGLNFL
LPVCIIVTMNLVLFRVASKHACDMKRRSLIGSNHKVRPSMIKLGANIKAA
KTVLVLVFLFLVSWLTLILLTFLNSLCKICHPEYVTYLGNAINFSSIALN
PVLYGLRNSEIRRQINIQKRNFLSLFCPSYAKVPASDRSMDSSVYTTHYD
VNSRKSSFAVTFITESET

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040954	XLOC_040954	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065317	TCONS_00065317	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 34..58 score: 18.42 coord: 148..169 score: 20.82 coord: 67..88 score: 33.0 coord: 112..134 score: 24.6 coord: 286..312 score: 24.03 coord: 191..214 score: 17.99 coord: 249..273 score: 24.68
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 50..304 e-value: 2.9E-36 score: 125.0
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 118..134
None	No IPR available	GENE3D	1.20.1070.10		coord: 18..343 e-value: 7.7E-55 score: 185.3
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 6..337
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 49..304 score: 34.594

Blast

[Close]

BLAST of TCONS_00065317-protein vs. Swiss-Prot (Human)
Match: ADRB1 (Beta-1 adrenergic receptor OS=Homo sapiens GN=ADRB1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.342e-21
Identity = 75/337 (22.26%), Postives = 150/337 (44.51%), Query Frame = 0

Query:   24 PEKMTPQFKLGLSIYYSVLISIAVLFNVILIGTICSRRKLLTVTNILVMNLAIGDLVTSILVVPFDIELLLRGIFPFGKVMCAFSSMAFLLSLPSSVFCLLLLTMERFVSIVFPFHRIRYIRKRNTLIAIGIAWAYSLLFAIIPLF------SKEEVVVIWMEQ--CHFLYSYDYLYMQLGLNFLLPVCIIVTMNLVLFRVASKH--ACDMKRRSLIGS-------------------------------------NHKVRPSMIKLGANIKAAKTVLVLVFLFLVSWLTLILLTFLNSLCKICHPEYVTYLGNAINFSSIALNPVLYGLRNSEIRR 313
            PE ++ Q+  G+ +  ++++ + V  NV++I  I    +L T+TN+ +M+LA  DLV  +LVVPF   +++ G + +G   C   +   +L + +S+  L ++ ++R+++I  PF     + +      +   WA S L + +P+         +E    + +   C F+ +  Y      ++F +P+CI+  + L +FR A K     D   R  +G                                        K RPS +      KA KT+ +++ +F + WL   L   + +  +   P+ +    N + +++ A NP++Y  R+ + R+
Sbjct:   50 PEPLSQQWTAGMGLLMALIVLLIVAGNVLVIVAIAKTPRLQTLTNLFIMSLASADLVMGLLVVPFGATIVVWGRWEYGSFFCELWTSVDVLCVTASIETLCVIALDRYLAITSPFRYQSLLTRARARGLVCTVWAISALVSFLPILMHWWRAESDEARRCYNDPKCCDFVTNRAYAIASSVVSFYVPLCIMAFVYLRVFREAQKQVKKIDSCERRFLGGPARPPSPSPSPVPAPAPPPGPPRPAAAAATAPLANGRAGKRRPSRLVALREQKALKTLGIIMGVFTLCWLPFFLANVVKAFHRELVPDRLFVFFNWLGYANSAFNPIIY-CRSPDFRK 385

The following BLAST results are available for this feature:

BLAST of TCONS_00065317-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00065317-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADRB1	4.342e-21	22.26	Beta-1 adrenergic receptor OS=Homo sapiens GN=ADRB...	[more]

You are here

TCONS_00065317-protein (polypeptide) - C. hemisphaerica