TCONS_00065496-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065496-protein
Unique NameTCONS_00065496-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length865

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065496-protein ID=TCONS_00065496-protein|Name=TCONS_00065496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=865bp
KIIRMGSSKKEKKEKKKKKRRYSSGEENSRNDYDDYYNDKKSSKKSKYDS
PNRDSLPQTEEYVYDYSGQEMVQGSRKSPDNSADYWPSKSKKERKRKKSP
PLAPPGTDWGTNDRDDLEDGEVDWKDADDMRRDREYQEEVDRKYREKQKA
DKRRNKSPSPPQPSSKEDASLSIEETNKLREKLGLKPLQVGGPSSEKEEK
SYADREDVHKPATNISEKKHSDKMRDKMDAIREKRKINQKLKKVKGLGEE
DDPAVDSAAAWVAKSRVAEKEKKMAAKRAQMLEEMDEEFGVSDLIDQSVP
PPRVKREPTYSSKDLRGLTVQHKASDIKDGGDVVLTLEDKDILDDDNDDT
LVNVNIKDDERARQNIQNKNKRPGYQAYDEVDDETGMLKVRNVLDKYDDE
IEGAKKQGFTLDNAGKADGEDTMEQIRETLKAQQVSLEMAAPSLARDFFT
EEEMVKFKKPKKKVRKVRKRELLKADDLLRLDVDSLKDRGSRKNRAANKT
DTKKKQQETNDGEEDMDIVPSMPDELDFFVAVQQQEEPEPIMEDDEAEQE
LQIALQRTRRTKMKNEREEGMDEEERLQKMAMELLNKPEEKTFLPETMAT
SASTKSKKKGKGAIVLDSTSEFCRTLGELPTVGSSRNNKPEPKVPEKKEV
EEMTKATTGGWEQVDMSEPMDTAANIEEEEDEDVLEAEPIPHGIAATLEL
ANMKGYLKDGKEKVRKFDPLNLPETKASIDIEKLRDEEKGRYSGRGGYDR
DRDRDRYDPYAFKEKSNYKPEFKLEYVDNKGRNLNQKEAFRLLSHKFHGK
GSGKLKTEKRAKKLVEEKKLQMMSSIDTPLNTASMFKEKQKQSQSAHIVL
SGGGKNLLSNNTLKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041047XLOC_041047Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065496TCONS_00065496Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005011SNU66/SART1
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 387..407
NoneNo IPR availableCOILSCoilCoilcoord: 563..583
NoneNo IPR availableCOILSCoilCoilcoord: 267..287
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 627..668
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 556..575
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 484..520
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 837..865
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..237
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 587..613
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 736..755
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..312
IPR005011SNU66/SART1 familyPFAMPF03343SART-1coord: 170..817
e-value: 1.3E-132
score: 443.4

Blast
[Close]
BLAST of TCONS_00065496-protein vs. Swiss-Prot (Human)
Match: SNUT1 (U4/U6.U5 tri-snRNP-associated protein 1 OS=Homo sapiens GN=SART1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.845e-46
Identity = 111/265 (41.89%), Postives = 156/265 (58.87%), Query Frame = 0 
Query:  611 KGAIVLDSTSEFCRTLGELPTVGSSRNNKPEPKVPEKKEVEEMTKATTGGWEQVDMSEPMDTAANIEEEEDED--------VLEAEPIPH-GIAATLELANMKGYLKDGKEKVRKFDPLN--LPETKASIDIEKLRDEEKGRYSGRGGYDRDRDRDRYDPYAFKEKSNYKPEFKLEYVDNKGRNLNQKEAFRLLSHKFHGKGSGKLKTEKRAKKLVEEKKLQMMSSIDTPLNTASMFKEKQKQSQSAHIVLSGGGKNLLSNNTLK 864
            KGAIV ++TSEFCRTLGE+PT G + N + + ++ + +  EE  ++  GG E         +  N++EE+ +         +L+ EPI + G+AA L L   KG L+   +KV +    N  LP     I+ +   D++  R     G+ +D          FKEK  YKP+ K+EYVD  GR L  KEAFR LSH+FHGKGSGK+KTE+R KKL EE  L+ MSS DTPL T ++ +EKQK  ++ +IVLSG GK++ +N   K
Sbjct:  548 KGAIVFNATSEFCRTLGEIPTYGLAGNREEQEELMDFERDEE--RSANGGSESDGEENIGWSTVNLDEEKQQQDFSASSTTILDEEPIVNRGLAAALLLCQNKGLLETTVQKVARVKAPNKSLPSAVYCIEDKMAIDDKYSRREEYRGFTQD----------FKEKDGYKPDVKIEYVDETGRKLTPKEAFRQLSHRFHGKGSGKMKTERRMKKLDEEALLKKMSSSDTPLGTVALLQEKQKAQKTPYIVLSGSGKSMNANTITK 800
The following BLAST results are available for this feature:
BLAST of TCONS_00065496-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNUT12.845e-4641.89U4/U6.U5 tri-snRNP-associated protein 1 OS=Homo sa... [more]
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