TCONS_00066942-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066942-protein
Unique NameTCONS_00066942-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066942-protein ID=TCONS_00066942-protein|Name=TCONS_00066942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MSSTPIPLNKVSNGVHKNKRLEGYFEDAATGLINKKLPKELLLRVFSFLD
IVALCRCAQVSKAWNLLALDGSNWQQVNLFEFQRDVRTNVVQSLSRRCGG
FLKTLNLKGCQGIEDDALRTFAQNCKNIEELVLCDCNKITNKTCIYLSNF
ANKLVVLDFESCTQVDDLGLAKIGSGCSRLEHLNIAWCRKVSSAGLIAIA
HGCPSLELLVASGCVSIRDEGLRVLAVHCGGLKKIVLQGCTNITDNGIKP
LGDNCNALEFINISECEALTDQTLKYIADGCHELKTLEAARCSQFTDTGF
STLARGCHSMQRLDLEECTLITDHTLHCLSYNCSEIVNLTFSHCELITDE
GIRHLAGGTCAIEKLEIIELDNCPLITDQALEYLMNCRSLNRLELYDCHN
ITRGGIRRLKSRLPNVRVQAYFAPVTPPPATPNRRQRSCRCCEIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041837XLOC_041837Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066942TCONS_00066942Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001810F-box_dom
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 229..254
e-value: 0.071
score: 22.2
coord: 203..228
e-value: 0.96
score: 18.5
coord: 151..176
e-value: 22.0
score: 11.8
coord: 281..306
e-value: 0.0086
score: 25.3
coord: 177..202
e-value: 9.7E-5
score: 31.7
coord: 255..280
e-value: 0.042
score: 23.0
coord: 387..412
e-value: 0.38
score: 19.8
coord: 99..124
e-value: 0.02
score: 24.1
coord: 333..358
e-value: 4.7E-4
score: 29.5
coord: 362..386
e-value: 220.0
score: 4.1
coord: 307..332
e-value: 0.0082
score: 25.3
coord: 125..150
e-value: 0.07
score: 22.2
IPR001810F-box domainSMARTSM00256fbox_2coord: 37..77
e-value: 2.1E-6
score: 37.3
IPR001810F-box domainPFAMPF12937F-box-likecoord: 36..78
e-value: 6.9E-11
score: 41.8
IPR001810F-box domainPROSITEPS50181FBOXcoord: 31..77
score: 11.432
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 84..206
e-value: 3.7E-16
score: 58.2
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 207..309
e-value: 4.1E-18
score: 64.6
coord: 310..418
e-value: 3.1E-14
score: 52.0
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 338..356
e-value: 1.6
score: 8.9
coord: 102..121
e-value: 0.95
score: 9.6
coord: 177..200
e-value: 0.049
score: 13.6
NoneNo IPR availableGENE3D1.20.1280.50coord: 31..78
e-value: 2.2E-13
score: 49.4
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 56..417

Blast
[Close]
BLAST of TCONS_00066942-protein vs. Swiss-Prot (Human)
Match: FXL20 (F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2)

HSP 1 Score: 490.345 bits (1261), Expect = 2.052e-172
Identity = 238/433 (54.97%), Postives = 307/433 (70.90%), Query Frame = 0 
Query:   13 NGVHKNKRLEGYFEDAATGLINKKLPKELLLRVFSFLDIVALCRCAQVSKAWNLLALDGSNWQQVNLFEFQRDVRTNVVQSLSRRCGGFLKTLNLKGCQGIEDDALRTFAQNCKNIEELVLCDCNKITNKTCIYLSNFANKLVVLDFESCTQVDDLGLAKIGSGCSRLEHLNIAWCRKVSSAGLIAIAHGCPSLELLVASGCVSIRDEGLRVLAVHCGGLKKIVLQGCTNITDNGIKPLGDNCNALEFINISECEALTDQTLKYIADGCHELKTLEAARCSQFTDTGFSTLARGCHSMQRLDLEECTLITDHTLHCLSYNCSEIVNLTFSHCELITDEGIRHLAGGTCAIEKLEIIELDNCPLITDQALEYLMNCRSLNRLELYDCHNITRGGIRRLKSRLPNVRVQAYFAPVTPPPATPNRRQRSCRCCEIL 445
            NGV K+ R E  F ++   +INKKLPKELLLR+FSFLD+V LCRCAQVS+AWN+LALDGSNWQ+++LF+FQRD+   VV+++S+RCGGFL+ L+L+GC G+ D+ALRTFAQNC+NIE L L  C K T+ TC  LS F +KL  LD  SCT + ++ L  +  GC  LE LNI+WC +V+  G+ A+  GC  L+ L   GC  + DE L+ +  HC  L  + LQ C  ITD G+  +   C+ L+ +  S C  +TD  L  +   C  L+ LE ARCSQ TD GF+TLAR CH ++++DLEEC  ITD TL  LS +C  +  L+ SHCELITD+GIRHL  G CA ++LE+IELDNCPLITD +LE+L +C SL R+ELYDC  ITR GI+RL++ LPN++V AYFAPVTPPP+    RQR CRCC IL
Sbjct:    6 NGVTKS-RFE-MFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL 436
The following BLAST results are available for this feature:
BLAST of TCONS_00066942-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FXL202.052e-17254.97F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBX... [more]
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