TCONS_00069097-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069097-protein
Unique Name	TCONS_00069097-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	311

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069097-protein ID=TCONS_00069097-protein|Name=TCONS_00069097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MYPSMLLSCILLVLLGTTELAPAPLDDLSACVNPFTNETYKDGDNWMEGK
CAHCSCDQGKRFCALESCKIDCDPKYLVQKEDRCCPICVPPPPKDCIDET
TNTTRPHKSNWKPDACSSCTCEHGETICATQDCAPVMCKDPVTPEGECCP
RCVTQECWDRESKSYYKEMDKWTMSDGCTSCFCFMGSPMCMSPGCALEEC
DEGVKHVKVKGICCPVCENKLICEVEDGRKFVEGNRWQDDDCKVCKCTKD
GIQCNNPIYEKDQCDSNFVQLNQKCPKVCLNASKLRKEEKQQEGENEKEE
EEEAEVNPIYP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043056	XLOC_043056	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069097	TCONS_00069097	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001007	VWF_dom
IPR011991	WHTH_DNA-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 280..307
None	No IPR available	GENE3D	2.10.70.10		coord: 30..74 e-value: 3.1E-4 score: 20.3 coord: 162..192 e-value: 0.13 score: 12.0 coord: 99..136 e-value: 2.3E-4 score: 20.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 287..311
None	No IPR available	SUPERFAMILY	57603	FnI-like domain	coord: 162..219
None	No IPR available	SUPERFAMILY	57603	FnI-like domain	coord: 30..90
None	No IPR available	SUPERFAMILY	57603	FnI-like domain	coord: 95..155
IPR001007	VWFC domain	SMART	SM00214	vwc	coord: 96..152 e-value: 6.0E-7 score: 39.1 coord: 223..279 e-value: 2.0 score: 5.7 coord: 31..88 e-value: 0.0081 score: 25.4 coord: 157..217 e-value: 0.31 score: 15.3
IPR001007	VWFC domain	PFAM	PF00093	VWC	coord: 101..152 e-value: 3.0E-8 score: 33.7 coord: 35..88 e-value: 2.5E-6 score: 27.6
IPR001007	VWFC domain	PROSITE	PS01208	VWFC_1	coord: 116..152
IPR001007	VWFC domain	PROSITE	PS01208	VWFC_1	coord: 51..88
IPR001007	VWFC domain	PROSITE	PS50184	VWFC_2	coord: 29..89 score: 10.635
IPR001007	VWFC domain	PROSITE	PS50184	VWFC_2	coord: 155..218 score: 8.906
IPR001007	VWFC domain	PROSITE	PS50184	VWFC_2	coord: 94..153 score: 11.263
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 195..306 e-value: 4.5E-4 score: 19.4

Blast

[Close]

BLAST of TCONS_00069097-protein vs. Swiss-Prot (Human)
Match: FRAS1 (Extracellular matrix protein FRAS1 OS=Homo sapiens GN=FRAS1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.835e-19
Identity = 72/260 (27.69%), Postives = 103/260 (39.62%), Query Frame = 0

Query:    6 LLSCILLVLLGTTELAPAPLDDLSACVNPFTNETYKDGDNWMEGKCAHCSCDQGKRFCALESCKIDCDPK-------YLVQKEDRCCPICVPPPPKDCIDETTNTTRPHKSNWKPDACSSCTCEHGETICATQDCAPVMCKD---PVTPEGECCPRCVTQECWDRESKSYYKEMDKWTMSDGCTSCFCFMGSPMCMSPGCALEECDEGVKHVKVKGICCPVCENKLICEVEDGRKFVEGNRWQDDDCKVCKCTKDGIQCN 255
            +L   L + L   E A  P     ACV  + +    D   W    C  C C      C    C+   +P+        L    ++CCP CV   P  C  E       H + W    CS C+C HGE  C  Q C P+ C        PEG CCP CV            +++ + W +S  C  C C  G   C +  C    C++    V+V G CCP C  +  C    G+ +  G +W ++ C  C C +  ++C+
Sbjct:    3 VLKVWLGLALALAEFAVLPHHSEGACV--YQDSLLADATIWKPDSCQSCRCHGDIVICKPAVCR---NPQCAFEKGEVLQIAANQCCPECVLRTPGSCHHE--KKIHEHGTEWASSPCSVCSCNHGEVRCTPQPCPPLSCGHQELAFIPEGSCCPVCVGLGKPCSYEGHVFQDGEDWRLSR-CAKCLCRNGVAQCFTAQCQPLFCNQDETVVRVPGKCCPQCSAR-SCSAA-GQVYEHGEQWSENACTTCICDRGEVRCH 252

HSP 2 Score: 83.9593 bits (206), Expect = 8.929e-18
Identity = 69/242 (28.51%), Postives = 104/242 (42.98%), Query Frame = 0

Query:   35 FTNETYKDGDNWMEGKCAHCSCDQGKRFCALESCK-IDCDP-KYLVQKEDRCCPICVPPPPKDCIDETTNTTRPHKSNWKPDACSSCTCEHGETICATQDCAPVMC---KDPVTPEGECCPRCVT--QECWDRESKSYYKEMDKWTMSDGCTSCFCFMGSPMCMSPGCALEECDEGVKHVKVKGICCPVCENK-LICEVEDGRKFV-----------EGNRWQDDDCKVCKCTKDGIQCNNP 257
            +    ++DG++W   +CA C C  G   C    C+ + C+  + +V+   +CCP C     + C          H   W  +AC++C C+ GE  C  Q C P+ C   +      G+CC  CV+    C       Y  EM  W  S  C  C C  G   C +  CA  EC    + + + G CCP C ++   C  E+  +F+           EG +W+D  CKVC+C    + C  P
Sbjct:  161 YEGHVFQDGEDWRLSRCAKCLCRNGVAQCFTAQCQPLFCNQDETVVRVPGKCCPQC---SARSC--SAAGQVYEHGEQWSENACTTCICDRGEVRCHKQACLPLRCGKGQSRARRHGQCCEECVSPAGSCSYDGVVRYQDEM--WKGS-ACEFCMCDHGQVTCQTGECAKVECARDEELIHLDGKCCPECISRNGYCVYEETGEFMSSNASEVKRIPEGEKWEDGPCKVCECRGAQVTCYEP 394

The following BLAST results are available for this feature:

BLAST of TCONS_00069097-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069097-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FRAS1	3.835e-19	27.69	Extracellular matrix protein FRAS1 OS=Homo sapiens...	[more]

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TCONS_00069097-protein (polypeptide) - C. hemisphaerica