TCONS_00069409-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069409-protein
Unique Name	TCONS_00069409-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	913

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069409-protein ID=TCONS_00069409-protein|Name=TCONS_00069409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=913bp
MVKEKEASYKRSLLASITSNETVDGDTQESCKDEMLDDDCDDSRFSFNSF
CQEWVDFCLALNGFFEKLFYKLGFLLASNPTLTVIFGVIVPLFLTGGFFR
FKMLQRTEDLYIPEKSQAFEDLRRAEKFFPVRVKAEQFIVKPHNRDRIFH
QDTFRILLQIHQNITRLPNFHQVCIKNHFQHCTVLSPLEIFKYDATNFIH
IKPTLDIVFNNKSIILSNGRQAFTSFPYYFGQFQFDHQRGLISGAESIHS
VYLVKDPIDEDIYNDLDKFDRYYTQYMEKTKTELKSKGFDLMYTSALGIE
TSISESAMQEVMLIPVAFILMTIFCAITLLRFKNQVGGHFMVAFSGIICL
FLGIGSAFGLIMMFGQPYIAFAGVLPFLVLGVGIDNIFIIIHAIDRQDPE
IRGPYRVAKALSQIGASITMATMTTIVAFFVSMFTYFPAIRYFCFYAGLS
ILFCYIQVLTVFISLLSFDVRRIENKRRDVIFCFTEKLEGDVWERAKDRV
SLKLMKIYSRFLLKTPVKYTLFTLSLVMTGLGVIGAMHIDQSFDKVVLCA
PESPYVEFYNYFNRAFPIGDEVSVIVDTPLNYGDPQIQHQYSSLSQICQE
NRHVKHASMNWMSALRDWSTKTQTNITGPHFIPALHGFLKMNPFFYPDVI
FDNRGNIKASRMIMYLKDNTDSDFLKKAMLTLRSDLREKNDLPVYAISYA
FIFYEQYAVILQNTIRNIAICATAILVITLPYLVNPKVTLLVFYGFISLM
FELFGIMYVWGVSLNALSMIILVMGIGFSVDYSAHIAHAFVKSKKRTARE
RVYEALETMGSSVAMGGVSTFIGVMVKAFAVNEIFKIFFKMVFGIVILGL
VHGLIILPIHLELFCRGDVILSHHVSYRAGKETNTKKDQEKQMLNGNGLL
HHEEQNGNIDQPV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043259	XLOC_043259	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069409	TCONS_00069409	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003392	Ptc/Disp
IPR000731	SSD

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1640.10		coord: 266..480 e-value: 1.5E-37 score: 128.4
None	No IPR available	GENE3D	1.20.1640.10		coord: 666..866 e-value: 5.5E-30 score: 103.7
None	No IPR available	SUPERFAMILY	82866	Multidrug efflux transporter AcrB transmembrane domain	coord: 292..468
None	No IPR available	SUPERFAMILY	82866	Multidrug efflux transporter AcrB transmembrane domain	coord: 682..865
IPR003392	Protein patched/dispatched	PFAM	PF02460	Patched	coord: 113..865 e-value: 1.0E-102 score: 344.6
IPR000731	Sterol-sensing domain	PROSITE	PS50156	SSD	coord: 310..468 score: 35.424

Blast

[Close]

BLAST of TCONS_00069409-protein vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 5.976e-60
Identity = 228/974 (23.41%), Postives = 413/974 (42.40%), Query Frame = 0

Query:   60 ALNGFFEKLFYKLGFLLASNPTLTVIFGVIVPLFLTGGFFRFKMLQRTEDLYIPEKSQAFEDLRRAEKFFPVRVKAEQFIVKPHNRDRIFHQD-------------TFRILLQIH------QNITRLPNFHQVCIKNHFQHCTVLSPLEIFKYDATNFIHIKPTLDIVFNNKSIILSNGRQAFTSFPYYFGQFQFDHQRGLISGAESIHSVYLVKDPI------------------DEDI---------------YNDLDKFDRYYTQYMEKT----KTELKSKGFDLMYTSALGIETSISESAMQEVMLIPVAFILMTIFCAITLLRFKNQ----VGGHFMVAFSGIICLFLGIGSAFGLIMMFGQPY-IAFAGVLPFLVLGVGIDNIFIIIHAIDRQDPEIRGP---YRVAKALSQIGASITMATMTTIVAFFVSMFTYFPAIRYFCFYAGLSILFCYIQVLTVFISLLSFDVRRIENKRRDVIFCFTEKLEGDVWERAKDRVSLKLMK-IYSRFLLKTPVKYTLFTLSLVMTGLGVIGAMHIDQSFDKVVLCAPESPYVEFYNYFNRAFPIGDEVSVIVDTPLNYGDPQIQHQYSSLSQICQENRHVKH---------------ASMNWMSALRDWSTKTQT------NITG---------PHFI------------PALHGFLKMNPFFYPD-------------------VIFDNRGNIKASRMIMY---LKDNTD-SDFLKKAMLTLRSDLREKNDLP-----VYAISYAFIFYEQYAVILQNTIRNIAICATAILVITLPYLVNPKVTLLVFYGFISL-MFELFGIMYVWGVSLNALSMIILVMGIGFSVDYSAHIAHAFVKSKKRTARERVYEALETMGSSVAMG-GVSTFIGVMVKAFAVNEIFKIF-FKMVFGIVILGLVHGLIILPIHLELFCRGDVILSHHVSYRAGKETNTKKDQEKQMLN 895
            A  G   +LF + G     NP   + F ++     + G    ++     DL+    SQA  +    ++ F    + EQ I++    D+  +Q                +IL Q+       +NIT   +   V +++       L+PL  +  + T    I   L+   N+ S++       F  +  Y   F +      +    S++   L+ DP                   D++                YND +K  R   Q  EK         K+    + +T+   IE  ++  +  +V  + +++ +M ++ ++ L   K+     V     +  +GI+ +   +  + G+    G P  +    V+PFLVL VG+DNIFI++ A  R D  ++G     ++ + L ++  S+ +++ +  VAFF+   +  PA+  F  +AGL++   ++  +T F+SLL  D++R E  R D IFC     E     +A +    +  K  YS  LLK  ++  +  + + +    +     +D   D+ +    +S  V+++   ++    G  V  +++   +Y   + Q+        C  +  V+                A  +W+    DW  K Q+      NIT          P  +            P    F++  P F  D                   ++  +   + A+  + Y   L+ + D  D LKKA L + S++ E   +      V+  S  ++FYEQY  I+ +TI N+ +   AI ++T+  L     + ++    I++ +  +FG+M++WG+SLNA+S++ LVM  G SV++ +HI  AF  S K +  ER  EAL  MGSSV  G  ++ F G++V AFA ++IF+IF F+M   +V+LG  HGLI LP+ L       +  S + +     E   K  + +++LN
Sbjct:  330 AFEGCLRRLFTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYDNETVTLQD-----ICLAPLSPYNTNCT----ILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLY-----CVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQR--AQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQR-DERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLD-IFCCVRGAEDGTSVQASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCG-GMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDW-VKPQSSCCRVDNITDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARL-IASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSY-----IGPSVNKAKSCATEERYKGTERERLLN 1277

The following BLAST results are available for this feature:

BLAST of TCONS_00069409-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069409-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NPC1	5.976e-60	23.41	Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE...	[more]

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TCONS_00069409-protein (polypeptide) - C. hemisphaerica