TCONS_00069748-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069748-protein
Unique NameTCONS_00069748-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1118

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069748-protein ID=TCONS_00069748-protein|Name=TCONS_00069748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1118bp
MNMNFSEIDKDVLFQEIQQIQNTLETNNTLAGLTNINNDEEISDDEVISA
NKSHPQGYSYYQQYDDDEEEDSDFIDSSGSDNESSYQIYETKEPSRFGHF
FDALKIKSSDNENQPSASGISDNVKKRIQGQSIYDNDGSQSPKIYHDFST
PIMSPAQSSTNEEEEEAKSIDISIPSTYSTLPAKKKQQLSTANLYVERIF
REFRKGYEQPTLSTVNKFDTRTLKSSGRLETMEQLLLLNRSYQETLVDEL
KIIRIALTKNGLAQDEMSKTSSTGVEKLGKGSLYRSCLGRFGVPYFKDAD
GFGPDDNEDTKKLKQISKVNVFSKGGRTWTSYEIKSLREGVYNSNLEKRL
DPLLQRLKQYDKEYREKKLEGKTIDRSGRAEITKQISDIKALPMDEILKE
SYDIDFMKVAKNFVPDREDFECQIYWCNVLHPSINQNKFTKEEDSKLIKL
AKKYKNHRWEDIAKELDTNRTPVQCLQRFQRTLNKDIIKSQWTQQDDDRL
IEGIKLYQRDWILVADHVEGKTQDQCIHRWEHTLNPNIKRGKWSQEEDEA
LMEAVLRLGRKNWKAAKESVPGRTAAQCRERFVSRLDPDINATLFSFEED
ELLIELVNQFGIGKWSMMTKYFDRRQDSFLLRRYKQIMPKKYAEYQNEVL
AKKKHVLTYFMHREDEKRDYDIKELDLEVGEVRKPSEKAKKTNNKKKKEP
ETPQKEKRRRNANPLGIPIPTNLLGKRGAEEKNKEEEKEYGPTVTYYLDG
FAQVIDVNERLKLVLDEVCMAEPKAFRARCNIAITDLKLKRVAPQTLKDE
FEACRQVLLTRLPEKAELLENILTETARSADAFIEQVEDVIASHKKKMQA
GEEQPQETQQPTTPSTIATSAASSFGRTSHHRKASKPLRVVEVGKVRRPI
NQDPITVDVSDEFDSDDSMPDTPRPPPMLGSQPPTKRPPVTETDQLKIFT
WILQTLHIDTAGVMRSLPQKDLANSIKDQNPYNQGNTFPKCLPLSPNSST
LRGFRTLLLHRKRLSEQVNKSTTPINKEALQDTPMYNALSSRFKSMFVWP
AFLATFMPRRAEELPSKKILDQTPTKLPQFNFNKRMNIPGRRVPTSPQTR
MQHPMYGSASPQRNHSXV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043433XLOC_043433Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069748TCONS_00069748Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR017877Myb-like_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 834..854
NoneNo IPR availableCOILSCoilCoilcoord: 343..363
NoneNo IPR availableGENE3D1.10.10.60coord: 591..715
e-value: 8.6E-9
score: 34.9
NoneNo IPR availableGENE3D1.10.10.60coord: 317..422
e-value: 0.0013
score: 17.9
NoneNo IPR availableGENE3D1.10.10.60coord: 423..491
e-value: 8.1E-16
score: 57.1
NoneNo IPR availableGENE3D1.10.10.60coord: 538..590
e-value: 1.3E-18
score: 65.9
NoneNo IPR availableGENE3D1.10.10.60coord: 492..537
e-value: 2.3E-13
score: 49.6
NoneNo IPR availablePFAMPF13921Myb_DNA-bind_6coord: 492..551
e-value: 1.7E-14
score: 53.7
NoneNo IPR availableCDDcd00167SANTcoord: 542..582
e-value: 4.91793E-9
score: 52.963
NoneNo IPR availableCDDcd00167SANTcoord: 492..534
e-value: 8.58154E-7
score: 46.4146
NoneNo IPR availableCDDcd00167SANTcoord: 595..638
e-value: 3.3083E-4
score: 38.7106
IPR001005SANT/Myb domainSMARTSM00717santcoord: 539..588
e-value: 3.6E-11
score: 53.1
coord: 435..485
e-value: 2.6E-12
score: 56.9
coord: 325..432
e-value: 27.0
score: 5.0
coord: 591..640
e-value: 0.0048
score: 26.1
coord: 488..536
e-value: 5.8E-10
score: 49.1
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 437..481
e-value: 7.7E-11
score: 41.9
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 431..487
score: 19.669
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 535..590
score: 22.54
IPR017877Myb-like domainPROSITEPS50090MYB_LIKEcoord: 395..430
score: 4.043
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 537..634
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 433..530

Blast
[Close]
BLAST of TCONS_00069748-protein vs. Swiss-Prot (Human)
Match: SNPC4 (snRNA-activating protein complex subunit 4 OS=Homo sapiens GN=SNAPC4 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.981e-56
Identity = 145/430 (33.72%), Postives = 246/430 (57.21%), Query Frame = 0 
Query:  230 ETMEQLLLLNRSYQETLVDELKIIRIALTKNGLAQDEMSK--TSSTGVE-KLGKGSLYRSCLGRFGVPYFKD-ADGFGPDDNEDTKKLKQISKVNVFSKGGRT-WTSYEIKSLREGVYNSNLEKRLDPLLQRLKQYDKEYREK---KLEGKTIDRSGRAEITKQISDIKALPMDEILKESYDI-DFMKVAK-NFVPDREDFECQIYWCNVLHPSINQNKFTKEEDSKLIKLAKKYKNHRWEDIAKELDTNRTPVQCLQRFQRTLNKDIIKSQWTQQDD---DRLIEGIKL-----YQRDWILVADHVEGKTQDQCIHRWEHTLNPNIKRGKWSQEEDEALMEAVLRLGRKNWKAAKESVPGRTAAQCRERFVSRLDPDINATLFSFEEDELLIELVNQFGIGKWSMMTKYFDRRQDSFLLRRYKQIMPKK 641
            E  E  L LN  YQE + ++L    + L +N   Q+E+ +    S G + K GK     + +G F  PYFKD   G GP  NEDT++ K    +  F +   T W ++E   LR+ V +  L++ L P L +L +Y  + + K   +LE + +++ GR E  K+I DI  LP + +L    D  D+ K++  NF   R   E + +W N  HPSIN+ ++++EE+ +L  +A  + +  W+ IA+EL T+R+  QCLQ+FQ+  NK + + +WT+++D    +L++ +++     Y+R    +  ++EG+   Q I+RW  +L+P +K+G W+ EED  L++AV + G ++W   +E VPGR+ AQCR+R++ RL   +    ++ +E+E LIEL+ ++G+G W+ +      R  S  L ++K +M KK
Sbjct:   81 EDPETCLQLNMVYQEVIQEKLAEANLLLAQNREQQEELMRDLAGSKGTKVKDGKSLPPSTYMGHFMKPYFKDKVTGVGPPANEDTRE-KAAQGIKAFEELLVTKWKNWEKALLRKSVVSDRLQRLLQPKLLKL-EYLHQKQSKVSSELERQALEKQGR-EAEKEIQDINQLPEEALLGNRLDSHDWEKISNINFEGSRSAEEIRKFWQNSEHPSINKQEWSREEEERLQAIAAAHGHLEWQKIAEELGTSRSAFQCLQKFQQH-NKALKRKEWTEEEDRMLTQLVQEMRVGSHIPYRR----IVYYMEGRDSMQLIYRWTKSLDPGLKKGYWAPEEDAKLLQAVAKYGEQDWFKIREEVPGRSDAQCRDRYLRRLHFSLKKGRWNLKEEEQLIELIEKYGVGHWAKIASELPHRSGSQCLSKWKIMMGKK 502
The following BLAST results are available for this feature:
BLAST of TCONS_00069748-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNPC41.981e-5633.72snRNA-activating protein complex subunit 4 OS=Homo... [more]
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