TCONS_00069865-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069865-protein
Unique Name	TCONS_00069865-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1802

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069865-protein ID=TCONS_00069865-protein|Name=TCONS_00069865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1802bp
MFHERIQSVNFALYTSDEIKQLSVRRITSTETFDVLGHPVTNGLCDPVLG
PAMDLSDRCETCGLSSVHCPGHFGHIELPLPIYHPMFYKLMIKLLRGSCF
TCHRLITKLSVTHLFVRQIELLDKEFLTEAQNLDNIYISALAENAHCSTT
DIDLQRKVCREIDNFYHEVIANKTESKKSEFTKNLVKARLDIMNGFIKNK
LLSTVKECPHCNSIKRNIRQEHNIRIFFKSVAESTVKRAVASKTIDKTKK
TSTNSQQQNNEVQEEDMWEAEDEGYEEENKNEENELGDDDPKDSDHENET
DLRRRLTNDEYITPEEVKNHFIQLWNTEIKAMKCLLGSYKVPDASKKVTT
PEIFFLDNIVVPPIRFRPQSAMGDLKFENPQTANLNQILSSCQVLEEILF
KIQEGSDEFIPVTYAKKSGQRGPQNRSIPGTTYKEQLNSAWFTLQGDVNR
FMDSSLDKLNTSPMPGVKQLLEKKEGLFRKHMMGKRVNYACRSVISPDPF
INTDEIGVPMVFASKLTYAQPVTPLNLKQLQEMVINGPNKYPGAVMIELE
DGSKRMLPPGKQNEDQRRGLARKLLSSDLPNRNFNANKXGLARKLLSSDL
PNRNFNANKKVYRHLQNGDVMLLNRQPTLHRPSIMAHKVKVLPKERTLRL
HYANCKSYNADFDGDEMNAHFPQSELGRAEAYNLVSTNHNYLSPKDGKPL
AGLIQDHVISGVRMTSRNTLFEREEYQQLIYSGLIDKPGRIKLLPPCIRK
PKMLWSGKQVFSTILLNIIPKGKFPLNMAGNKAKVSDNNWPKEKGKKSHT
PIKDINDPFLLENQVIVRGGELMTGILDKTQYGSTAFSLVHCVYEIYGGE
TSGKLLSTIARLFTAYLQYTGFTLGVQAILVAESAEEKRREIMNEGRQSG
DNSAIEALNMQADIDSEGLFDRVQKAHLTNQGVELRQLDLSMKSRTDAIN
NKINGVCMRGLIQKFPSNSLQMMVQSGAKGSTVNTMQISCLLGQIELEGR
RPPLSMSGRSLPSFQPYDTSPRAGGFVDGRFLTGIRPQEYFFHCMAGREG
LIDTAVKTSRSGYLQRCLIKHLEALYVQYDMTVRDGDGSIVQFMYGDDGV
DVLKCQYLRQDQFKTVIDNQKAYLSILNPNEVSQAVDVKKAKKIQKKQDK
WRRVNGEAYSSTYHHSRSSPFLLYEKETRKKVEKKYPSKETTFLRTKADL
KLMERWVKSDGPTKGSYESRCEPILDPIISRHNPSCYFGAVSEEFRNRVR
MYTECNPDNKLIEDEEGNESDTESGTNVGKMSKDAFEPMMDIKYLKSLVQ
PGEAVGLLAGQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTAS
ETIKTPQMDVLIKAGKETEAKQIAKQLTKLKLIDVLQLVSVDECIAKSAE
GISKRQFKIRIGILPQYAYEEMTHASPDDILLYMETHFLKMISNAVKRIM
LHQRTKTLLTTEKDDSTPKNANRQNEEGDENAPAVAPDEVDDLADLSDED
AENDGGADDVKGRSRRTQFTSYDNPEDREEEIHEKDVDEADEMLRNVPED
EPMLPEDENEVETPTRSTARLHPSLSTSDTRKSRVLRTCGNFIVDYSYDD
ESSEWCEATFQFDLAGSKVMMINIIEKLAEKAVILEAPGIERAMTSQCKN
PSEAGRHRLKCEGVNLRELWRFPDILELGTLYSNNIHKIAKAYGIEAGRR
VLIKEVQDVFKVYGIEIDPRHLSLIADYMTFEGVYRPFNRFGIESNPFPF
QKMSFETSMSFLKTAAAFGQADELGSPSSRIIVGRVINQGTGMMDLLPKL
TV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043514	XLOC_043514	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069865	TCONS_00069865	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006592	RNA_pol_N
IPR007083	RNA_pol_Rpb1_4
IPR007081	RNA_pol_Rpb1_5
IPR007066	RNA_pol_Rpb1_3
IPR007080	RNA_pol_Rpb1_1
IPR000722	RNA_pol_asu

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed 5'-3' RNA polymerase activity
GO:0003677	DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 245..285
None	No IPR available	GENE3D	2.40.40.20		coord: 610..689 e-value: 1.3E-29 score: 101.7
None	No IPR available	GENE3D	2.40.50.100		coord: 1296..1563 e-value: 1.2E-22 score: 79.9
None	No IPR available	GENE3D	3.30.1490.180		coord: 516..609 e-value: 1.6E-15 score: 56.6
None	No IPR available	CDD	cd02735	RNAP_I_Rpa1_C	coord: 1293..1797 e-value: 4.50251E-128 score: 403.111
None	No IPR available	CDD	cd01435	RNAP_I_RPA1_N	coord: 11..1080 e-value: 0.0 score: 1174.27
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1569..1799 coord: 298..406 coord: 1235..1450 coord: 609..778 coord: 3..125 coord: 806..1129 coord: 178..231 coord: 436..554
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 352..715 e-value: 5.9E-133 score: 457.7
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 937..1027 e-value: 1.3E-23 score: 82.9
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 1034..1746 e-value: 2.5E-94 score: 315.5
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 690..877 e-value: 3.8E-36 score: 124.3
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 4..398 e-value: 2.8E-22 score: 79.3
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 484..686 e-value: 1.9E-65 score: 220.1

Blast

[Close]

BLAST of TCONS_00069865-protein vs. Swiss-Prot (Human)
Match: RPA1 (DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens GN=POLR1A PE=1 SV=2)

HSP 1 Score: 1379 bits (3568), Expect = 0.000e+0
Identity = 772/1825 (42.30%), Postives = 1054/1825 (57.75%), Query Frame = 0

Query:    1 MFHERIQSVNFALYTSDEIKQLSVRRITSTETFDVLGHPVTNGLCDPVLGPAMDLSDRCETCGLSSVHCPGHFGHIELPLPIYHPMFYKLMIKLLRGSCFTCHRLITKLSVTHLFVRQIELLDKEFLTEAQNLDNIYISALAENAHCSTTDIDLQRKVCREIDNFYHEVIANKTESKKSEFTKNLVKARLDIMNGFIKNKLLSTVKECPHCNSIKRNIRQEHNIRIFFKSVAESTVKRAVASKTIDKTKKTSTNSQQQNNEVQEEDMWEAEDEGYEEENKNEENELGDDDPKDSDHENETDLRRRLTNDEYITPEEVKNHFIQLWNTEIKAMKCLLGSYKVPDASKKVTTPEIFFLDNIVVPPIRFRPQSAMGDLKFENPQTANLNQILSSCQVLEEILFKI---QEGSDEFIPVTYAKKSGQRGPQNRS----IPGTTYKEQLNSAWFTLQGDVNRFMDSSLDKLNTSPMPGVKQLLEKKEGLFRKHMMGKRVNYACRSVISPDPFINTDEIGVPMVFASKLTYAQPVTPLNLKQLQEMVINGPNKYPGAVMIELEDGSKRMLPPGKQNEDQRRGLARKLLSSDLPNRNFNANKXGLARKLLSSDLPNRNFNANKKVYRHLQNGDVMLLNRQPTLHRPSIMAHKVKVLPKERTLRLHYANCKSYNADFDGDEMNAHFPQSELGRAEAYNLVSTNHNYLSPKDGKPLAGLIQDHVISGVRMTSRNTLFEREEYQQLIYSGLIDKPGRIKLLPPCIRKPKMLWSGKQVFSTILLNIIPKGKFPLNMAGNKAKVSDNNWPKEKGKKSHTPIKDINDPFLLENQVIVRGGELMTGILDKTQYGSTAFSLVHCVYEIYGGETSGKLLSTIARLFTAYLQ-YTGFTLGVQAILVAESAEEKRREIMNEGRQSGDNSAIEALNMQADIDSEGLFDRVQKAHLTNQGVELRQLDLSMKSRTDAINNKINGVCMR-GLIQKFPSNSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLSMSGRSLPSFQPYDTSPRAGGFVDGRFLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEALYVQYDMTVRDGDGSIVQFMYGDDGVDVLKCQYLRQDQFKTVIDNQKAYLSILNPNEVSQAVDVKKAKKIQKKQDKWRRVNGEAYSSTYHHSRSSPFLLYEKETRKKVEKKYPSKETTFLRTKADLKLMERWVKSDGPTKGSYESRCEPILDPIISRHNPSCYFGAVSEEFRNRVRMYTECNPDNKLIEDEEGNESDTESGTNVGKMSKDAFEPMMDIKYLKSLVQPGEAVGLLAGQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASETIKTPQMDVLIKAGKET--EAKQIAKQLTKLKLIDVLQLVSVDECIAKSAEGISKRQFKIRIGILPQYAYEEMTHASPDDILLYMETHFLKMISNAVKRIMLHQRTKTLLTTEKDDSTPKNANRQNEEGDENAPAVAPDEVDDLADLSDEDA-ENDGGADDVKGRSRRTQFTSYDNPE--------------DREEEIHE---KDVDEADEMLRNVPEDEPMLPEDENEVETPTRSTARLHPSLSTSDTRKSRVLRTCGNFIVDYSYDDESSEWCEATFQFDLAGSKVMMINIIEKLAEKAVILEAPGIERAMTSQCKNPSEAGRHRLKCEGVNLRELWRFPDILELGTLYSNNIHKIAKAYGIEAGRRVLIKEVQDVFKVYGIEIDPRHLSLIADYMTFEGVYRPFNRFGIESNPFPFQKMSFETSMSFLKTAAAFGQADELGSPSSRIIVGRVINQGTGMMDL 1796
            M   R+Q ++F +Y+++E+K+LSV+ IT+    D LG+P  NGL D  LGPA D  + C TC     +C GH GHIELPL +Y+P+ +  +  LLRGSC  CH L    +V HL + Q+ +L+   L     L+ I    L EN   S ++I        E++ +  E++ N     +    KN+ +++  ++  F K  +    K CPHC + +  +R+EHN ++     A   V R    K                         ++E  G EE    +                            Y+TP   + H   LW  E   +  L       D  +    P +FFLD +VVPP R+RP S +GD  F N QT NL  ++    ++ ++L  +   Q+  +E    T  ++       +RS    +PG +  ++L + W  LQ  VN   DS +DKL     PG++Q+LEKKEGLFRKHMMGKRV+YA RSVI PD +INT+EIG+PMVFA+KLTY QPVTP N+++L++ VINGPN +PGA M+  EDGS+  L     +  QR  +A++LL+                    ++  P       K V RH++NGD++LLNRQPTLHRPSI AH+ ++LP+E+ LRLHYANCK+YNADFDGDEMNAHFPQSELGRAEAY L  T+  YL PKDG+PLAGLIQDH++SG  MT+R   F RE Y +L+Y GL DK GR+KLL P I KP  LW+GKQV ST+L+NIIP+   PLN++G KAK++   W KE  +     +   N   + E+QVI+R GEL+ G+LDK  YGS+A+ LVHC YEIYGGETSGK+L+ +ARLFTAYLQ Y GFTLGV+ ILV   A+ KR+ I+ E    G  +   ALN+      + +  + Q AHL     +   +DL  K   +  +N+IN  CM  GL ++FP NSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPL  SG+SLP F+PY+ +PRAGGFV GRFLTGI+P E+FFHCMAGREGL+DTAVKTSRSGYLQRC+IKHLE L VQYD+TVRD DGS+VQF+YG+DG+D+ K Q+L+  QF  +  N +  +   + +EV    D KKA    +   KW+  +           R   FL Y ++ ++ V+      E    R+    +++  W + D  ++  Y+ +     DP +S   P  YF +VSE F  +V  Y+            +   + TE      ++S D    ++ +K+ +SL +PGEAVGLLA QSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM AS  IKTP M V +   K+     K + KQLT++ L +VLQ + V E      +    + +++R   LP   Y++     P+DIL +MET F K++  ++K+   + +           +T ++ +   E G          + ++   + D +A E D  A D K + ++ +   Y++ E                E   H    +   E DE +    E++P LP    +   PT S     P    +  R+ + +R    FI DY YD E S WC+ T +  L      M +++  LA  AVI    GI R + ++  N        L  EG+NL EL+++ ++L+L  LYSN+IH IA  YGIEA  RV+ KE++DVF VYGI +DPRHLSL+ADYM FEGVY+P NRFGI SN  P Q+M+FETS  FLK A   G  DEL SPS+ ++VG+V+  GTG+ +L
Sbjct:    7 MPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPA-DSKEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIR------EELEQYTTEIVQNNLLGSQGAHVKNVCESKSKLIALFWKAHM--NAKRCPHCKTGRSVVRKEHNSKLTITFPA--MVHRTAGQK-------------------------DSEPLGIEEAQIGKRG--------------------------YLTPTSAREHLSALWKNEGFFLNYLFSGMD-DDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTAL--SAVDMTQREAVAKQLLTP-------------------ATGAPKPQ--GTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSG-KAKITGKAWVKETPRS----VPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHFRAIKKWQSKHPNTL------LRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYS------------QEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKK--NNKASAFRNVNTRRATQRDLDNAGELGRSRGEQEG--DEEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHREGARKTQEQDEEVGLGTEEDPSLPALLTQPRKPTHSQ---EPQGPEAMERRVQAVREIHPFIDDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFEL 1715

The following BLAST results are available for this feature:

BLAST of TCONS_00069865-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069865-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RPA1	0.000e+0	42.30	DNA-directed RNA polymerase I subunit RPA1 OS=Homo...	[more]

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TCONS_00069865-protein (polypeptide) - C. hemisphaerica