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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00070109-protein ID=TCONS_00070109-protein|Name=TCONS_00070109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
MAATALKSQIRKQNSLQRASSSKSAPKGGDIERIARSGTDVTYTVDLSSI
NIKDVPDLGKYKHCKSLDLSCNQIKSIYKDTFQCCSYLKEIKLYSNHLSK
VEGFRELQHLENLQLQYNNISKINNSLSGCRSLKFLRLDSNKISVLKGKE
FCSLHQLTYLDISANQLEDISFVTVLPLLQELHCTHNKLTEIPDIMSLKK
LQEIDLSHNTISNVTGLKGLANLNILCVKNNFISSMTSVKTLKTLTELNV
SNNKIKCLSQFKTVIPSIEILNISCNHIENIDEILQLKDFQHLKEVEFLD
NPVLEEPETDEQLKAAFESLDLVYLNGRSLKKQQVKRPTSAMRPMSANQL
VSERVISNQLQYDEMCLSDFEDRINTQFIALQGLLSELPKQSQSPEKKKS
LETKTTSMSSIRSLQSSNYDRPSSRCSSRQRLTDALSFAEKTFKDGPTNA
E Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PRINTS | PR00019 | LEURICHRPT | coord: 198..211
score: 42.19
coord: 157..170
score: 46.01 |
| None | No IPR available | SMART | SM00365 | LRR_sd22_2 | coord: 198..219
e-value: 1.8
score: 17.6
coord: 242..263
e-value: 63.0
score: 9.0
coord: 85..106
e-value: 520.0
score: 1.6
coord: 220..241
e-value: 200.0
score: 5.0
coord: 154..172
e-value: 32.0
score: 11.4
coord: 107..129
e-value: 130.0
score: 6.5 |
| None | No IPR available | SMART | SM00364 | LRR_bac_2 | coord: 154..173
e-value: 140.0
score: 5.0
coord: 176..195
e-value: 11.0
score: 13.3
coord: 242..261
e-value: 0.58
score: 19.2
coord: 265..284
e-value: 270.0
score: 2.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 389..431 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..31 |
| IPR003591 | Leucine-rich repeat, typical subtype | SMART | SM00369 | LRR_typ_2 | coord: 65..84
e-value: 150.0
score: 3.5
coord: 107..130
e-value: 11.0
score: 12.9
coord: 265..287
e-value: 390.0
score: 0.2
coord: 242..263
e-value: 190.0
score: 2.8
coord: 154..174
e-value: 120.0
score: 4.4
coord: 176..199
e-value: 26.0
score: 9.8
coord: 131..153
e-value: 210.0
score: 2.5 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | GENE3D | 3.80.10.10 | | coord: 114..163
e-value: 3.4E-14
score: 51.9 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | GENE3D | 3.80.10.10 | | coord: 18..113
e-value: 3.6E-14
score: 51.5 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | GENE3D | 3.80.10.10 | | coord: 164..423
e-value: 4.2E-27
score: 94.0 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | SUPERFAMILY | 52058 | L domain-like | coord: 43..324 |
| IPR001611 | Leucine-rich repeat | PFAM | PF13855 | LRR_8 | coord: 65..120
e-value: 3.1E-10
score: 39.6 |
| IPR001611 | Leucine-rich repeat | PFAM | PF13516 | LRR_6 | coord: 243..255
e-value: 1.3
score: 9.1 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 87..108
score: 6.472 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 267..288
score: 7.874 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 156..177
score: 7.781 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 109..130
score: 7.25 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 200..221
score: 8.359 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 63..84
score: 6.926 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 178..199
score: 7.527 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 222..243
score: 6.357 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 132..153
score: 7.073 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 244..265
score: 6.919 |
| IPR025875 | Leucine rich repeat 4 | PFAM | PF12799 | LRR_4 | coord: 179..218
e-value: 1.7E-7
score: 31.3 |
Blast
BLAST of TCONS_00070109-protein vs. Swiss-Prot (Human)
Match: LRGUK (Leucine-rich repeat and guanylate kinase domain-containing protein OS=Homo sapiens GN=LRGUK PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 6.055e-20 Identity = 71/217 (32.72%), Postives = 120/217 (55.30%), Query Frame = 0
Query: 37 SGTDVTY-TVDLSSINIKDVPDLGKYKHCKSLDLSCNQIKSIYKDTFQCCSYLKEIKLYSNHLSKVEGFRELQHLENLQLQYNNISKINNSLSGCRSLKFLRLDSNKISVLKGKEFCSLHQLTYLDISANQLEDISFVTVLPLLQELHCTHNKLTEIPDIMSLKKLQEIDLSHNTISNVTGLKGLANLNILCVKNNFISSMTSVKTLKTLTELNVSN 252
SGT+ Y + LS N+ DV L Y H + LDLS N+I+ + C YL E+ N+L+ F+ ++L+ +N IS+I + LS +L L LD N+I + G E C+ L +L ++ N++ I+ + LP+ + L ++N++ I + LK LQ +DLSHN IS++ GL+ L ++ +++N I+ + ++ +K L L V N
Sbjct: 123 SGTEQVYLNLTLSGCNLIDVSILCGYVHLQKLDLSANKIEDL--SCVSCMPYLLELNASQNNLTTFFNFKPPKNLKKADFSHNQISEICD-LSAYHALTKLILDGNEIEEISGLEMCN--NLIHLSLANNKITTINGLNKLPI-KILCLSNNQIEMITGLEDLKALQNLDLSHNQISSLQGLENHDLLEVINLEDNKIAELREIEYIKNLPILRVLN 333
The following BLAST results are available for this feature:
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