TCONS_00003047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003047
Unique NameTCONS_00003047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003047 ID=TCONS_00003047|Name=TCONS_00003047|organism=Clytia hemisphaerica|type=transcript|length=212bp
CTATTTATAAATAACCTatctagataaaaatatttacatcttAAGTATAT
ATAAAAATTCTACCCAACCTTAAGGGCTAACTACTGGGCCATCTAatata
aatgaataaatatgaAAAGCTATACGTAAgaacataacataacataacat
gCATGTGGCCTACTGAAATCTGGTTGCGGCCTACTGAAATCTGGTTATAC
CCTTGGAAGACA
Run BLAST on NCBI

transcript from alignment at sc0000024:483048..483259

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003047 ID=TCONS_00003047|Name=TCONS_00003047|organism=Clytia hemisphaerica|type=transcript|length=212bp|location=Sequence derived from alignment at sc0000024:483048..483259 (Clytia hemisphaerica)
TGTCTTCCAAGGGTATAACCAGATTTCAGTAGGCCGCAACCAGATTTCAG
TAGGCCACATGcatgttatgttatgttatgttcTTACGTATAGCTTTtca
tatttattcatttatatTAGATGGCCCAGTAGTTAGCCCTTAAGGTTGGG
TAGAATTTTTATATATACTTaagatgtaaatatttttatctagatAGGTT
ATTTATAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001678XLOC_001678Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003047-exon-sc0000024-1491911889:483048..483259TCONS_00003047-exon-sc0000024-1491911889:483048..483259Clytia hemisphaericaexon
TCONS_00003047-exon-sc0000024-1510915933:483048..483259TCONS_00003047-exon-sc0000024-1510915933:483048..483259Clytia hemisphaericaexon
TCONS_00003047-exon-sc0000024-1575043694:483048..483259TCONS_00003047-exon-sc0000024-1575043694:483048..483259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:483048..483259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.79694	0	6.33367	4.64738	0	0	0	1.68322	4.71385	1.45972	0	0	2.79023	0	1.58819	1.70437	3.14948	0	0	0	1.35212	1.97855	1.60346	1.45777	1.50147	10.7202	1.91758	0	3.10438	3.16287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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