TCONS_00003202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003202
Unique NameTCONS_00003202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003202 ID=TCONS_00003202|Name=TCONS_00003202|organism=Clytia hemisphaerica|type=transcript|length=599bp
aacCCCCTGAACAGATGCCAGATTCGCTTtacgaaatcaaaacattcaaa
accagTTTTCAATTTTCTGGTTTCTTTGACTTTGATGATTGTTAAAGTTG
GAGAGGTGGAAGTGATAAGCTGATCAGGAGTCTGGTGTAAGAAAAATGGA
AAGGAGAAACATAATTCAACCACAAAATCATGATGTGTCGTGATGCTGTA
CCATAACATAAACTCCACGAAACCATTTCTCGTCAAGTAAATCAAGGCTA
AGGTTAAATGACGTTATCAATCACTGCAACTGTACAACTCTCTGCACCAT
AAAGAAAAAGTCCAGATAACCTACACTACATGATCTGACAGACAAAACTG
GAGAGGGAACACCACAAACTGACTCGATTTTTGAAGAAAGCTGATTGACT
TATGATCCTGAAATCAAGTTATTTGGCAAGTGACGGTTACtgatttcttt
gatgtttttaattttttgccctcatatattttatacatttgtattttttc
tgtatttttttacCTTGTAATTTAGATTATCTAAATATTAAATTTACTTT
ATCTTATTTAATATGAATTTTTAGTTCTTCTAAAGATGAAATAGATCAG
Run BLAST on NCBI

transcript from alignment at sc0000025:800426..802074-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003202 ID=TCONS_00003202|Name=TCONS_00003202|organism=Clytia hemisphaerica|type=transcript|length=1649bp|location=Sequence derived from alignment at sc0000025:800426..802074- (Clytia hemisphaerica)
AACCCCCTGAACAGATGCCAGATTCGCTTTACGAAATCAAAACATTCAAA
ACCAGTTTTCAATTTTCTGGTTTCTTTGACTTTGATGATTGTTAAAGTTG
GAGAGGTGGAAGTGATAAGCTGATCAGGAGTCTGGTGTAAGAAAAATGGA
AAGGAGAAACATAATTCAACCACAAAATCATGATGTGTAAGTATTACTTC
ACCCATTTATATCAACAAATTAGTCTAAGTGCTATTTCTATCTATCCTAA
ACTAAGGGTCGATCAGACAACAATCATTTAAGGATTTTTTTGTATCTTTT
TGTTTCTTTAATTTGCCTTTGCGATTTGTCATGTCATTAACCCAGATCAG
GGGTATATTTTCTACTTTATTTTACTTTTTTTTGTAAATGTTGTTCTCCT
TTGCTGTTCATTTGTTGTCAAAATGTTTGACTCTTTTTTTTCTTTCTACA
CTACAGGTCGTGATGCTGTACCATAACATAAACTCCACGAAACCATTTCT
CGTCAAGTAAATCAAGGCTAAGGTAAGGGAATCATCTGCTTATTTGTATG
CTACTTTTTTTAAAAGAACTATAAGCTGGATAATTTGCTATATTATGTAG
GTATTTCAAGTTTTTTCTTTGAGCAATGAAATGTTTTTGGTAATATTCTT
CTCAATTTCTTACTATTCTGAGATATGATTAAAATGATTATCTTTGTTTG
TGAATGAATAATGGAGCAATATACATCAGTTTTGTTTATTTTTTATACAG
GTTAAATGACGTTATCAATCACTGCAACTGTACAACTCTCTGCACCATAA
AGAAAAAGTCCAGATAACCTACACTACATGATCTGACAGACAAAACTGGA
GAGGTATTTATCACAGAATTCAATTCAATTTTTCAACTATTCCTAGTCCA
TTTGCTTTACAAGGTAACCTTTTCTCTCGAAACTAGAGATCAAATGTATA
TAAAGTGATTTTACTAAACTGTTGTTTTATAGCCAATGTTTTGTTAATTT
CCCGGAGGGGGGGGGCACTTAGTCAAAATTGGGTATGGGGACGTTCTGCT
GGGCAGGGTTCCTTTTTTTATCTAGCAGGGTGCAAAATTTTCTAATTTTC
AAGATGAGTTTCTGATAGGGTCGATTATTTTGATTATTACAATTTTCAGG
GTGGAAATGAGAAAATTTAAAAAATTTTCGGCTACTTTTATTAATTTTTG
CCCCTCCAGGGTGAAAATGGGAGATCTTTTAATTTTTTGTTCTGACAGGG
TTCCAATTTTGCCAAAAGTTTACATCTGACTAGGATCAACTTTTCAAACT
CCAGTGGTACTTCCCCGTCGGCCGTCAAGGTCGGAGCCTTTGGGTTAATT
TCGTGATAAGATTCATATTTACTTTTGATAGTTTGAATATATTATTTTTC
TTCAGGGAACACCACAAACTGACTCGATTTTTGAAGAAAGCTGATTGACT
TATGATCCTGAAATCAAGTTATTTGGCAAGTGACGGTTACTGATTTCTTT
GATGTTTTTAATTTTTTGCCCTCATATATTTTATACATTTGTATTTTTTC
TGTATTTTTTTACCTTGTAATTTAGATTATCTAAATATTAAATTTACTTT
ATCTTATTTAATATGAATTTTTAGTTCTTCTAAAGATGAAATAGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001767XLOC_001767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003202-exon-sc0000025-1575043694:801889..802074TCONS_00003202-exon-sc0000025-1575043694:801889..802074Clytia hemisphaericaexon
TCONS_00003202-exon-sc0000025-1575043694:801553..801618TCONS_00003202-exon-sc0000025-1575043694:801553..801618Clytia hemisphaericaexon
TCONS_00003202-exon-sc0000025-1575043694:801222..801324TCONS_00003202-exon-sc0000025-1575043694:801222..801324Clytia hemisphaericaexon
TCONS_00003202-exon-sc0000025-1575043694:800426..800669TCONS_00003202-exon-sc0000025-1575043694:800426..800669Clytia hemisphaericaexon
TCONS_00003202-exon-sc0000025-1510915933:801889..802074TCONS_00003202-exon-sc0000025-1510915933:801889..802074Clytia hemisphaericaexon
TCONS_00003202-exon-sc0000025-1510915933:801553..801618TCONS_00003202-exon-sc0000025-1510915933:801553..801618Clytia hemisphaericaexon
TCONS_00003202-exon-sc0000025-1510915933:801222..801324TCONS_00003202-exon-sc0000025-1510915933:801222..801324Clytia hemisphaericaexon
TCONS_00003202-exon-sc0000025-1510915933:800426..800669TCONS_00003202-exon-sc0000025-1510915933:800426..800669Clytia hemisphaericaexon
TCONS_00003202-exon-sc0000025-1491911889:801889..802074TCONS_00003202-exon-sc0000025-1491911889:801889..802074Clytia hemisphaericaexon
TCONS_00003202-exon-sc0000025-1491911889:801553..801618TCONS_00003202-exon-sc0000025-1491911889:801553..801618Clytia hemisphaericaexon
TCONS_00003202-exon-sc0000025-1491911889:801222..801324TCONS_00003202-exon-sc0000025-1491911889:801222..801324Clytia hemisphaericaexon
TCONS_00003202-exon-sc0000025-1491911889:800426..800669TCONS_00003202-exon-sc0000025-1491911889:800426..800669Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:800426..802074 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.120497	0	9.94668	6.15167	4.16258	3.66661	2.78641	3.96295	1.13807	2.64065	1.24582	1.53857	0	0.1195	0.084243	0.0747346	0.101537	0	0	0.299373	0.11133	0.107767	2.57677	2.2902	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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