TCONS_00003475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003475
Unique NameTCONS_00003475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1181

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003475 ID=TCONS_00003475|Name=TCONS_00003475|organism=Clytia hemisphaerica|type=transcript|length=1181bp
CTTAAATCGAACCtcgtatatttttataaaaagattgttgtttttataaa
aaaagcctggaaaccagataaaaaatggaagaaaatgaGAAAGAGAATCG
GTTCCCGTCTATTTTCAACAATGCGGGCACGGCGATTGCCAATGTTGGTA
AAATGAGTGGGACAGCGATCGCTGATAGAGCTGGTAGAATTGGTGGTACC
GTTGCTAACTTTGCCCGAAAAACTAAGAAAAAGagTCAACAAAGTTTATC
TGACAGCTTGACAATCGAAGAAATAAACGAATATAAACAAGCTTTCGCGT
TGTACGATCGAAACTCGAATGGAACTATCAACCAAAATGAATTACTAAGC
GTCTTGAGAAGCCTGGGACAGAATCCAACTGAACAAGAAGTCCAAGACAT
TATTAATGAGATGGATGCTAACAAGAACGGAAAGAttgaatttcaagaat
ttttagaGAAAATGGCAGAAcgaaatgagagaaatgatatGAGTGAAGAC
CTAAGAAACGCTTTTAGAGTATTCGATGCAAATGGTGATGGACGAATCAG
CGTTGAAGAATTACGTCACGTGATGGTGAATTTGGGCGATCCATTAACGG
ATGAAGAGGTCGATGAAATGATGCGAGAAGCAGACAAAGATAATGATGGT
TATGTTGATTATGAAGAGTTTGTAACCATGATGACAGAatgaaaagacaa
acaaaatATTGGATGACATGAATGATGGAcaagaattttaaaacaaattt
cttgaGATTCGGTTGGTTACGTGTCAAGCTAGTGAGACATTTAGAAATAT
TTATCCAAATNTTCTTGAGATTCGGTTGGTTACTGTGTCAAGCTAGTGAG
ACATTTAGAAATATTTATCCAAATTCCATTGTGTATCTAATTTCCAAAGT
AGTCGATTTAGTTGCCCAAAAGATCCACTTTTTTCGGGTATGACTGAAGA
AAAATGATGAACcatgacaaaaaaaacaattgtAAATATTGAATTATCTC
TATCTAATGATAtacttattttgaaattaaaaagatttatCGTTGTATTG
TTAATTAACGTAAACATTTATCAAGGTCAAAAATTATTTATGTATATTTT
ACATATTATATATTTCCATCAAGAAAAAAAGACATTTGAAAAGTATAAAA
CTTAATTTACAGTATACACTAAATTTATCAG
Run BLAST on NCBI

protein sequence of TCONS_00003475-protein

>TCONS_00003475-protein ID=TCONS_00003475-protein|Name=TCONS_00003475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MEENEKENRFPSIFNNAGTAIANVGKMSGTAIADRAGRIGGTVANFARKT
KKKSQQSLSDSLTIEEINEYKQAFALYDRNSNGTINQNELLSVLRSLGQN
PTEQEVQDIINEMDANKNGKIEFQEFLEKMAERNERNDMSEDLRNAFRVF
DANGDGRISVEELRHVMVNLGDPLTDEEVDEMMREADKDNDGYVDYEEFV
TMMTE
Run BLAST on NCBI

transcript from alignment at sc0000028:193442..199894-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003475 ID=TCONS_00003475|Name=TCONS_00003475|organism=Clytia hemisphaerica|type=transcript|length=6453bp|location=Sequence derived from alignment at sc0000028:193442..199894- (Clytia hemisphaerica)
CTTAAATCGAACCTCGTATATTTTTATAAAAAGATTGTTGTTTTTATAAA
AAAAGCCTGGAAACCAGATAAAAAATGGAAGAAAATGAGAAAGAGAATCG
GTTCCCGTCTATTTTCAACAATGCGGGCACGGCGATTGCCAATGTTGGTA
AAATGAGTGGGACAGCGATCGCTGATAGAGCTGGTAGAATTGGTGGTACC
GTTGCTAACTTTGCCCGAAAAACTAAGAAAAAGGTGTTGGATTTTATACA
AGATCTTTTGATTGAGTCTAGGCCATCTATTCAAATTTAGTTTGAAAATA
ACAAAAAACACATTTCAAGTTATATGTCGTATACCATAGTTTATATGCTA
GACGACTACTTTAAAAGACGATGGGGTGGGGTATGGTATAGTACTCCAGG
CAAGATATAACTTGGCCATAACTGATGCACATAATTGGTTTAACATAGAA
GTTAGATACAGTTGACGCTCTTTAATTCGACGTTCTACTATTCGATAGGC
TCCCTTATTCGATGAAATTTAAAGTCCCCGTCAACAAGAAATTCTCATAT
ATGACGCTCCCTTATTCGATAAGCTCCCTTATTCGAAAATCCAATTCCCC
TTGGAGGTCGAATTAGAGAGCGTCAACTGTATTTATGTTTCTTATCTCTA
TAGTTGATGTAAAAATTTTACAGACTATTATAGTACAGATGTCTTTGCTT
GAGACTAATTAATATCAACTATGGAACATAGCGCTGTCTTACTGAAACCG
TTTTCGTTCTTGTTTTTTTTAGAGTCAACAAAGTTTATCTGACAGCTTGA
CAATCGAAGAAATAAACGGTATGTCTATTTCAAATTCTTTCAGGTGAAGA
AAAGCCGTTACCCTAATTTGTGTATTCAATGTCAGATGGCATCCCCTTTA
AACCTACATACGCTTTAGAGCCATTCAGAGAAATCGTCAACCATACGATT
CGAAATATTACCGAGTTTATGTATCGGAGGATATCGAGGGCGACGGTTGT
GAAATCGATACAAAGCAAAGTCGATAGTCGATGTACGGCTCTATATCGTC
TTTGCTCACCTAAACAGACGGAGACGACGGTATTTTGGTGTTTTTACCGT
CGTCGAGCAAAGTGGCCGGTGATTTTGGAGACATGTCAACATTGCTTTAT
ACCGTCCCCCTCGATTTATCTCGAATACAGAAACTTGCTATTCAATGAAA
GAAAGTGGAAATGCTAAAATGGCAATACTCGCCCGAATTTTAAATTCTGA
AAAACGTGAAAATACACTAAAATCCGAACATATTTCGACCATGATTGTAC
ATACGCTGTGCTCGAGGTTGGCTATTTTTCCGAAAAAAACTGATTTAGGT
ACAGAATTTACAACATTAATCCTGTTGAAAATTTTGTGAAAGGTATGGAA
AAAATTTAAGTCTGAAAAATATAACATCAGGAATCAAAAATTATAGCCTA
GTAAACTAAACCCGTACTCACAAGGCTAATGACTATTTTTTTCCGAAAAA
AAACTGATTGTGATATAGGTTAGATATGGGTAATAGCCAAAAAATAAGTT
TTGTGGAGAATCCCCCTTTTGTTTTGCATATTACAACCTCATAATTGTAG
GAACAAATGTATGAGTTGTATATGTTTTTTTATAAGAACAAACAATATGA
GGCCACATAAAGCTTCGATGGCCAAAATATTAAGAATACGTTAAGAATAT
TTCAAGGCGGAATCCATTTCTTGAGAACACGGACAGAAATACTCAGAAAA
TGGTGAAAATAAGAACATGTTAAGAACATTTTAAACTGGAAACTTAAAAA
GTAAATGCCATCCGAAGTCTTCAAAGATTTGGATAATTTATAAATAAAAA
TGTGCACACTAACAAGGGAAGCGGTAGATTATTCAGTTCATTTTTTGTAT
AATAAGGATCCTGTTGGACCCATCAAAAATTTCTAAACGGAAATATAAGA
GAGACCTTAAAACCATAAAACACTGACATGCATAGTTTGTCTAACCTTAC
ACGAAGTCAAATCACTTGTGGTTAGATACAAGAGGTTTTTTTCTAACCGT
TATAATTGAATAGGAGTATCACTCTTTTTTATAAGCACAATCCTATACAA
ACAATGAAACTTATAAGTAAAAGTTGGTGTTTTGGCCGAAAAAGCCTCAG
TGCACGAATTTCCTATTAGCAAATTTATGTAAAAAATTCACGTAAATACA
TCGAGCAAAGCTCTGATTATCTGATGTGTCAGTTTTACTCGACGTTTTTA
CGTGACCTTCTTAAAAAAAGTACAGAATTCAGATTAGTCCTGTAGAAAAC
TTTATAAAAGGTATGGAAAAAAATATACCATCAGAAAGCAAAGTTGATGA
AATGGAGATTTAAAAAAATCTACGAAATCAATTTTTTTATAGAATGTTGG
GTAATAGATGATGATGTTTTTCTCACAACGGGAAGGGGAGCAATTTTTAG
GTGAATCTTTTTTATCATTCATAGGGCACTGACATGTATTCTTATATCAA
ATTCCATAAAATCAATCATTATTTGTTTTTCTTAAGAATATAAACAAGCT
TTCGCGTTGTACGATCGAAACTCGAATGGAACTATCAACCAAAATGAATT
ACTAAGCGTCTTGAGAAGCCTGGGACAGAATCCAACTGAACAAGAAGTCC
AAGACATTATTAATGAGGTACGCGCATGCGCTATGATGTGAAAAATCTTC
AGAATTGTTTACTTCACTGCATGCTTTTTTATAAGAATAGGAACATTCAT
GTTATTCACACAAATTTAGAATAGGCTAAGAATATCACAATCAAGGAATT
CGGCAACTAAGCCTAAGAATGCCATTATTTTAAAATTTGAATTTTCAATT
ACCCCCAGTGTTCAGTAACTCTAAAACCTTCACAAAAATGTCATATTTTT
GGCTTAAGGTTAAGGTACATGTTAATTTTAGCTTGAACCTTGAGCCTAAG
AAGGGGGGGTTTCACGGTTGGCGGAGGAGCGGAATCGGCCNAGCTTTTTT
TATAAGAATAGTAAGTAATATTCATGTTATTCACACAAACTTAGAATATG
CTAAGAATATCACAATCAAGGAATTCGGCAACTAAGCCTAAGAATGCCAT
TATTAGAGCATTTTCAAAATTGAATTGCCACTTACCCCCAGTAAGTTGTT
CAGTAACTCTGAAACCTTCACAAAAATTGTCATATTTTGCCTAAGGTTTT
TATACCATCTTAATTTTAGCTTGAACCTAGGTAGAACCCAAGAATACCGT
AACAATATTTTTTGTCCCAAAGAATTAAAAAAACCATTCTTATAAATAAT
AAGCCGTGTAGGGTGGAAATAAATGCAGCAAAGTCAAAAATTTCCGTTTG
CCCATGCTGAGGAAGTGAATCTTTGTCAAATCAACCAGGTGATTTATATC
CAATTTTTACCTTAGATTTTCGTCAAAATTTCAGAGACCTACCTCCAGGA
TTGTAGCATGCTTTTAGAGCCCCCCCCGGGGGAGATTGTCGAGGTTTTTG
GGGTCATCCCATAGAGGAAAAAAAATCTCTTGACTCTCTTTCTTTTTTCA
TTACAGATGGATGCTAACAAGAACGGAAAGATTGAATTTCAAGAATTTTT
AGAGAAAATGGCAGAACGAAATGAGAGAAATGATATGAGTGAAGACCTAA
GAAACGTAAGTGACAGTTAGTGGTGAATCTATGAGGGATTCAAAATTTGT
GACGGAGGAGTGTTTCTTTTAGCCATACTCCTTATAATGAAACAAAGACT
ATCCATCATAAACTTTGAACCCCCTTCGGATCCGCCACAGAACACTTCAT
CTTAATAACGAGTAGTAGACATAGTGTGCAGAGTGGTCTGAGCCCCCCCC
CCCATTAATATTTCATCCCCCCTATAAAGGTATCCCCCCTATTTTTAAAA
TTTTTTGATCTCGCACCATTTACAGGGGTCCGAGCCCCCAGCATATAATT
TGTATTCCCAGTATTGGGGAAGAATTTTGATGAATGAAATATATTTTTCA
NNNNNNCCCCCATTTTAACTGGAAAATTGCCCATCCCTTGAAAACTCGGA
TCCCCCCTTAAAAAAAGGGGGGGTTCATACTATGGTAGATCCCAAGTTTC
ATGAAAAGATCGAAGGGGAAGAAATTAATCTCATACCGAGAGGCCCTTAC
GCCACTTTTTGATTTTATTGATGGACTTGATTCAATCTTTCGTGAACAAT
ATCAGATCCAAGAAAATGCAAGAGACACGAAACATGTAATTCATTTGAAA
GAGAATTTGATCTTACTGAAAGGTGCAATCTCGCTTCTGGGTGTTTGATG
CCATAATTAATGAATCTGAAGTCATAATTGATGACGCGATCACTTCACAT
CTAGTTTCTATGAATGAAAAGTGAATAAATTTCATCAGATAAATTTTACC
TATTTAATTTTTTTAAAAGGTCAAACGTATACTTTTTCACCGACCTATTT
CACGACAGGATATATCATGCCAGAAAGCTGTTTTCACTGTCCTAACCAAC
TTTTTTTTTCGCGCAATCCTTTCTTTAGGCAAAAAAGGTTGAGAAAAAAA
CTGTCGCCCATTTCGCGTGAAAGTGGAGACCGGCCTTTAGGAACTATAGC
GTCTGAACATGATTTTAGTATAAGCTTACTACACTGATGTACTCCAAAAG
TTACAACTACCAATCAACTCTTTAAAATAATCCTATGCTGCTGGCTATTC
CTGTTCCTTTTACTACAGGTGGCTTTTTGCAGAGGTATTCATTAAAATAG
TCCCCAAATAATAAAAATCAATTTAACGTTTTTGTTAAATTTGGCTAACC
GAGCAGCTGTAATCTTTTTATTTTTCCTATTTTATATTTACAGGCTTTTA
GAGTATTCGATGCAAATGGTGATGGACGAATCAGCGTTGAAGAATTACGT
CACGTGATGGTGAATTTGGGCGATCCATTAACGGATGAAGAGGTCGATGA
AATGATGCGAGAAGCAGACAAAGATAATGATGGTTATGTTGATTATGAAG
GTGAGTGGGCGGAAGGGCGGAAAGACAGAAGAGTGGGTGTAGAAGAATAG
AAGCATGGGTGAAGAGTGTGTCAGAAAAAATCGAAACAGATAGTAAAATC
TCGTATATCTAACTGGAGTTTAGAATAATTAAAATCAAAATGCTTAACAA
TCAATAGATTTTAATTTTAGATTTCAAAGGTAATTGAAATGGAATTTTTG
AAAAAGGAATTTAGTAATTAGTTCATAAAGGTCGATATATTATGAGGATT
TTTTATCAATTCTGTTCCACTTTTTTCCGAACACACTGTAGAATGATAGA
AGGCTAAGGACGCTCTGATTCTTGAACTCAGAGGTAGGATATGAAGTCAA
ATATAATGATAAATATGTTGGTTATGAAAGCAGGGGGATTGATAGGCAGA
AACAAGGGTGTCAACCCTCTCAACCCTCTCCACCCTAGTTAAAGTCCTCG
CCGTGTTATTATAGAGACAGGGGTATCGATTTGAAAAAAGTTTTGCCTAT
GTCAATTTGGACAAAGTTTAGCCTAAGAAACAGGGGGTGTCGATTTTGAA
AAAGTTTAGCCTAAGAGACAGGGGTGTCGATTTGGACAAAGTTTAGCCTA
AGAGACAGGGGTGTCGATTTGGACAAAGTTTAGCCTAAGAGACAGGGGTG
TCGATTTGGACAAAGTTTAGCCTAAGAGACAGGGGTGTCGATTTGGACAA
AGTTTAGCCTAAGAGACAGGGGTGTCGATTTGGACAAAGTTTAGCCTAAG
AGACAGGGGTGTCGATTTGGACAAAGTTTAGCCTAAGAGACAGGGGTGTC
GATTTGGACAAGGTTTAGCCTAAGAGACAGCGGTGTGGATTTTGACAAAG
TTTAGACTAAGAGACAGGGTCGTCGATTTTAACTAAGCCTAACAATAATA
CCATTTTTTTAACCATTTTCTTCTACCATTTTTTTCAGAGTTTGTAACCA
TGATGACAGAATGAAAAGACAAACAAAATATTGGATGACATGAATGATGG
ACAAGAATTTTAAAACAAATTTCTTGAGATTCGGTTGGTTACGTGTCAAG
CTAGTGAGACATTTAGAAATATTTATCCAAATNTTCTTGAGATTCGGTTG
GTTACTGTGTCAAGCTAGTGAGACATTTAGAAATATTTATCCAAATTCCA
TTGTGTATCTAATTTCCAAAGTAGTCGATTTAGTTGCCCAAAAGATCCAC
TTTTTTCGGGTATGACTGAAGAAAAATGATGAACCATGACAAAAAAAACA
ATTGTAAATATTGAATTATCTCTATCTAATGATATACTTATTTTGAAATT
AAAAAGATTTATCGTTGTATTGTTAATTAACGTAAACATTTATCAAGGTC
AAAAATTATTTATGTATATTTTACATATTATATATTTCCATCAAGAAAAA
AAGACATTTGAAAAGTATAAAACTTAATTTACAGTATACACTAAATTTAT
CAG

Coding sequence (CDS) from alignment at sc0000028:193442..199894-

>TCONS_00003475 ID=TCONS_00003475|Name=TCONS_00003475|organism=Clytia hemisphaerica|type=CDS|length=3708bp|location=Sequence derived from alignment at sc0000028:193442..199894- (Clytia hemisphaerica)
AGTTTGTAACCATGATGACAGAATGAGCTTTTAGAGTATTCGATGCAAAT
GGTGATGGACGAATCAGCGTTGAAGAATTACGTCACGTGATGGTGAATTT
GGGCGATCCATTAACGGATGAAGAGGTCGATGAAATGATGCGAGAAGCAG
ACAAAGATAATGATGGTTATGTTGATTATGAAGATGGATGCTAACAAGAA
CGGAAAGATTGAATTTCAAGAATTTTTAGAGAAAATGGCAGAACGAAATG
AGAGAAATGATATGAGTGAAGACCTAAGAAACAATATAAACAAGCTTTCG
CGTTGTACGATCGAAACTCGAATGGAACTATCAACCAAAATGAATTACTA
AGCGTCTTGAGAAGCCTGGGACAGAATCCAACTGAACAAGAAGTCCAAGA
CATTATTAATGAGAGTCAACAAAGTTTATCTGACAGCTTGACAATCGAAG
AAATAAACGATGGAAGAAAATGAGAAAGAGAATCGGTTCCCGTCTATTTT
CAACAATGCGGGCACGGCGATTGCCAATGTTGGTAAAATGAGTGGGACAG
CGATCGCTGATAGAGCTGGTAGAATTGGTGGTACCGTTGCTAACTTTGCC
CGAAAAACTAAGAAAAAGAGTTTGTAACCATGATGACAGAATGAGCTTTT
AGAGTATTCGATGCAAATGGTGATGGACGAATCAGCGTTGAAGAATTACG
TCACGTGATGGTGAATTTGGGCGATCCATTAACGGATGAAGAGGTCGATG
AAATGATGCGAGAAGCAGACAAAGATAATGATGGTTATGTTGATTATGAA
GATGGATGCTAACAAGAACGGAAAGATTGAATTTCAAGAATTTTTAGAGA
AAATGGCAGAACGAAATGAGAGAAATGATATGAGTGAAGACCTAAGAAAC
AATATAAACAAGCTTTCGCGTTGTACGATCGAAACTCGAATGGAACTATC
AACCAAAATGAATTACTAAGCGTCTTGAGAAGCCTGGGACAGAATCCAAC
TGAACAAGAAGTCCAAGACATTATTAATGAGAGTCAACAAAGTTTATCTG
ACAGCTTGACAATCGAAGAAATAAACGATGGAAGAAAATGAGAAAGAGAA
TCGGTTCCCGTCTATTTTCAACAATGCGGGCACGGCGATTGCCAATGTTG
GTAAAATGAGTGGGACAGCGATCGCTGATAGAGCTGGTAGAATTGGTGGT
ACCGTTGCTAACTTTGCCCGAAAAACTAAGAAAAAGAGTTTGTAACCATG
ATGACAGAATGAGCTTTTAGAGTATTCGATGCAAATGGTGATGGACGAAT
CAGCGTTGAAGAATTACGTCACGTGATGGTGAATTTGGGCGATCCATTAA
CGGATGAAGAGGTCGATGAAATGATGCGAGAAGCAGACAAAGATAATGAT
GGTTATGTTGATTATGAAGATGGATGCTAACAAGAACGGAAAGATTGAAT
TTCAAGAATTTTTAGAGAAAATGGCAGAACGAAATGAGAGAAATGATATG
AGTGAAGACCTAAGAAACAATATAAACAAGCTTTCGCGTTGTACGATCGA
AACTCGAATGGAACTATCAACCAAAATGAATTACTAAGCGTCTTGAGAAG
CCTGGGACAGAATCCAACTGAACAAGAAGTCCAAGACATTATTAATGAGA
GTCAACAAAGTTTATCTGACAGCTTGACAATCGAAGAAATAAACGATGGA
AGAAAATGAGAAAGAGAATCGGTTCCCGTCTATTTTCAACAATGCGGGCA
CGGCGATTGCCAATGTTGGTAAAATGAGTGGGACAGCGATCGCTGATAGA
GCTGGTAGAATTGGTGGTACCGTTGCTAACTTTGCCCGAAAAACTAAGAA
AAAGAGTTTGTAACCATGATGACAGAATGAGCTTTTAGAGTATTCGATGC
AAATGGTGATGGACGAATCAGCGTTGAAGAATTACGTCACGTGATGGTGA
ATTTGGGCGATCCATTAACGGATGAAGAGGTCGATGAAATGATGCGAGAA
GCAGACAAAGATAATGATGGTTATGTTGATTATGAAGATGGATGCTAACA
AGAACGGAAAGATTGAATTTCAAGAATTTTTAGAGAAAATGGCAGAACGA
AATGAGAGAAATGATATGAGTGAAGACCTAAGAAACAATATAAACAAGCT
TTCGCGTTGTACGATCGAAACTCGAATGGAACTATCAACCAAAATGAATT
ACTAAGCGTCTTGAGAAGCCTGGGACAGAATCCAACTGAACAAGAAGTCC
AAGACATTATTAATGAGAGTCAACAAAGTTTATCTGACAGCTTGACAATC
GAAGAAATAAACGATGGAAGAAAATGAGAAAGAGAATCGGTTCCCGTCTA
TTTTCAACAATGCGGGCACGGCGATTGCCAATGTTGGTAAAATGAGTGGG
ACAGCGATCGCTGATAGAGCTGGTAGAATTGGTGGTACCGTTGCTAACTT
TGCCCGAAAAACTAAGAAAAAGAGTTTGTAACCATGATGACAGAATGAGC
TTTTAGAGTATTCGATGCAAATGGTGATGGACGAATCAGCGTTGAAGAAT
TACGTCACGTGATGGTGAATTTGGGCGATCCATTAACGGATGAAGAGGTC
GATGAAATGATGCGAGAAGCAGACAAAGATAATGATGGTTATGTTGATTA
TGAAGATGGATGCTAACAAGAACGGAAAGATTGAATTTCAAGAATTTTTA
GAGAAAATGGCAGAACGAAATGAGAGAAATGATATGAGTGAAGACCTAAG
AAACAATATAAACAAGCTTTCGCGTTGTACGATCGAAACTCGAATGGAAC
TATCAACCAAAATGAATTACTAAGCGTCTTGAGAAGCCTGGGACAGAATC
CAACTGAACAAGAAGTCCAAGACATTATTAATGAGAGTCAACAAAGTTTA
TCTGACAGCTTGACAATCGAAGAAATAAACGATGGAAGAAAATGAGAAAG
AGAATCGGTTCCCGTCTATTTTCAACAATGCGGGCACGGCGATTGCCAAT
GTTGGTAAAATGAGTGGGACAGCGATCGCTGATAGAGCTGGTAGAATTGG
TGGTACCGTTGCTAACTTTGCCCGAAAAACTAAGAAAAAGAGTTTGTAAC
CATGATGACAGAATGAGCTTTTAGAGTATTCGATGCAAATGGTGATGGAC
GAATCAGCGTTGAAGAATTACGTCACGTGATGGTGAATTTGGGCGATCCA
TTAACGGATGAAGAGGTCGATGAAATGATGCGAGAAGCAGACAAAGATAA
TGATGGTTATGTTGATTATGAAGATGGATGCTAACAAGAACGGAAAGATT
GAATTTCAAGAATTTTTAGAGAAAATGGCAGAACGAAATGAGAGAAATGA
TATGAGTGAAGACCTAAGAAACAATATAAACAAGCTTTCGCGTTGTACGA
TCGAAACTCGAATGGAACTATCAACCAAAATGAATTACTAAGCGTCTTGA
GAAGCCTGGGACAGAATCCAACTGAACAAGAAGTCCAAGACATTATTAAT
GAGAGTCAACAAAGTTTATCTGACAGCTTGACAATCGAAGAAATAAACGA
TGGAAGAAAATGAGAAAGAGAATCGGTTCCCGTCTATTTTCAACAATGCG
GGCACGGCGATTGCCAATGTTGGTAAAATGAGTGGGACAGCGATCGCTGA
TAGAGCTGGTAGAATTGGTGGTACCGTTGCTAACTTTGCCCGAAAAACTA
AGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001932XLOC_001932Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003475-proteinTCONS_00003475-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003475-exon-sc0000028-1575043694:199662..199894TCONS_00003475-exon-sc0000028-1575043694:199662..199894Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1575043694:199077..199122TCONS_00003475-exon-sc0000028-1575043694:199077..199122Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1575043694:197228..197358TCONS_00003475-exon-sc0000028-1575043694:197228..197358Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1575043694:196240..196338TCONS_00003475-exon-sc0000028-1575043694:196240..196338Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1575043694:194895..195051TCONS_00003475-exon-sc0000028-1575043694:194895..195051Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1575043694:193442..193956TCONS_00003475-exon-sc0000028-1575043694:193442..193956Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1510915933:199662..199894TCONS_00003475-exon-sc0000028-1510915933:199662..199894Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1510915933:199077..199122TCONS_00003475-exon-sc0000028-1510915933:199077..199122Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1510915933:197228..197358TCONS_00003475-exon-sc0000028-1510915933:197228..197358Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1510915933:196240..196338TCONS_00003475-exon-sc0000028-1510915933:196240..196338Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1510915933:194895..195051TCONS_00003475-exon-sc0000028-1510915933:194895..195051Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1510915933:193442..193956TCONS_00003475-exon-sc0000028-1510915933:193442..193956Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1491911889:199662..199894TCONS_00003475-exon-sc0000028-1491911889:199662..199894Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1491911889:199077..199122TCONS_00003475-exon-sc0000028-1491911889:199077..199122Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1491911889:197228..197358TCONS_00003475-exon-sc0000028-1491911889:197228..197358Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1491911889:196240..196338TCONS_00003475-exon-sc0000028-1491911889:196240..196338Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1491911889:194895..195051TCONS_00003475-exon-sc0000028-1491911889:194895..195051Clytia hemisphaericaexon
TCONS_00003475-exon-sc0000028-1491911889:193442..193956TCONS_00003475-exon-sc0000028-1491911889:193442..193956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:193442..199894 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
98.3281	97.8095	21.7347	11.7252	1.82121	1.08908	0	1.85883	2.10721	2.49705	2.55067	0.533141	21.7988	13.8159	0	0	9.22729	6.42856	51.6336	39.6136	2.8095	1.93602	48.179	36.0318	0	2.49185	2.78271	3.3116	18.5544	22.949
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00003475 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 6.118e-54
Identity = 87/140 (62.14%), Postives = 111/140 (79.29%), Query Frame = 3 
Query:  267 EEINEYKQAFALYDRNSNGTINQNELLSVLRSLGQNPTEQEVQDIINEMDANKNGKIEFQEFLEKMAERNERNDMSEDLRNAFRVFDANGDGRISVEELRHVMVNLGDPLTDEEVDEMMREADKDNDGYVDYEEFVTMMT 686
            E+I E+K+AF+L+D++ +GTI   EL +V+RSLGQNPTE E+QD+INE+DA+ NG I+F EFL  MA + +  D  E++R AFRVFD +G+G IS  ELRHVM NLG+ LTDEEVDEM+READ D DG V+YEEFV MMT
Sbjct:    8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
The following BLAST results are available for this feature:
BLAST of TCONS_00003475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM36.118e-5462.14Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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