TCONS_00003488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003488
Unique NameTCONS_00003488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1210

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003488 ID=TCONS_00003488|Name=TCONS_00003488|organism=Clytia hemisphaerica|type=transcript|length=1210bp
ATTGTATCAAATAATCTCTAACACTTTCAGGTCCTACGAATCAACACCAA
TCAGTAACTCTCCTTCACCGTATGGGTCGAGTGAAAAGACCCCCATCACT
GGCGACAACAAGTTGCAGCAAACACAAAAGCAAGTTGACCAGGTTGTTGA
TATAATGCGACAAAACATGGACAAAGTTTTGGAAAGAGATTCTAAATTAT
CAGAACTGGACAACCGTGCTGATGCTCTACAAGCAGGAGCTTCACAGTTC
GAAACAAATGCTGGtaaattaaaaaggaaaatgtgGTGGCAGAATTGTAA
AATGTGGATTATTCTCATTGTTGTAATTCTGGTTATCATTGCAATTATAG
TCATTTGGGTTGTATCTACCAATTAGAAAATCATTATTGGAGTTGGAACA
CTGTACTTCTGTAGCACAACACTGATGACAAAATGTTAGCTTTGGCTGGT
CACTGGGGATATGATGGTATATATTTACTTTGGCAGATGATATTCTTGAt
gttgtgaaggaaaataaaatgTGGGGAGAAGACACAATTATACAAATTGT
TCTCATGGAGTATTTTGTACATAGctatttttttaatgtcgatATTGCAG
TTTGTATAAGACCTTCTAAAAGATTGTTAATTATTATGTACAAAGCACAC
TTTTTGTTAGAAAGTGTTTGTGCGACAACctttttcttccatttcttttg
tttttatgttctttttttttttctttttatgccAATCTGATGATTTACTT
TTAGTTTATACTGTTTTTTActgtttatttaatttatttgaaattcaaaa
acataatttgtAATCTTACACGTAGAAAAAATGTTTCACTAATTAGTATT
ATCACAATTTAGCTAGAATTGGAGAAAATATACTTCTGAAAGAATTCTTT
AATTAGAACAACTGTTTTTGCAGGGTGTCGTCTGTGATTTTAAGTGCTTT
GTGTGATGTATTTCTTTCTACTAGTATCTGCTGAAAAAAAACTGCACAAA
TTATTTAACACATTGCTACGTTTATTATTTTGATTCTAGTTAAATTATAA
TAACATTAAATAATGGGTGCTTTGTGTATATTCTTTCATTACCAGAATTA
TATAATGAAATTAgaggaaatttaaaaattgttatCCTGAATTTTgcaat
tatttttgatttttaagactTTCTTAATAATGACTGGAAGCTTCTTTATG
TTTAAATGGG
Run BLAST on NCBI

transcript from alignment at sc0000028:472894..479929-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003488 ID=TCONS_00003488|Name=TCONS_00003488|organism=Clytia hemisphaerica|type=transcript|length=7036bp|location=Sequence derived from alignment at sc0000028:472894..479929- (Clytia hemisphaerica)
ATTGTATCAAATAATCTCTAACACTTTCAGGTCCTACGAATCAACACCAA TCAGTAACTCTCCTTCACCGTATGGGTAACTAATTTACTAAACACTGAGT TGAATCAGAACTAACAAAGTACATTTCAAGTTTACAATAAAGAACTTGCT AATAATTAGATATAATTAACACTATAGATATGATTAACACTAAAGATACA ATTAACACTATAGATACAATTAACACTATGATTATTGACATTTAAATATT AAAACGGAACTTTAAATAACCAACCAACCTCCCCTAATGGCATTACTAAA ATCTCAGACATATTTTAGGACTAAAATAATTGTCCTTGATTCATTGAACC ATAACCCAATTTTAAAAATAGGTATGTTGATAAGTATGCAGGCCATTTTT CATGCCCTTTAAGCGTCTGATTATCAGACGCTGCCCCTCTTGAAATTACT AGAATATTGGTAAAAGCAGCCTTTTTAATGGAAAAACACTGGAACAAGCA CTCTTTTTGGCCACCAACGGACGCTGCCTTACCTTTCTAAAATATGGCCT GGTATGTACACATGTTTTAGCCGATCTTGAACCTAATTTTGCTCTGATTC TCTCAAAAAGGAAACTTGAATATAAAACCCTGCACAGGTATTAACAGTAA GGGTTCTACTTTTTAAATCGAGGAATTGCATGTCTTCAAAAAGTTCTTTA ACCTTTCCGCCCCGAAAGACGTATCTGATACGTTCACCATACGTTCCGAA AGACGTATCTGATACGTTTTTAAGGTAACCTTTATATTTGGTCGGATTAC GCCCCAACCGTCAGAGGTACGGTAAAACCGATTAAAAAATCGGAATCAGC GTGAAATTTCAGATAAGAAACAATCAGGGTTTGTTTTGCTATGACGCAAC ATTTTTCAAAAATAGAAATGGTAGACCAAGCTGTGTTGCGTGATTTTGTG AAACTGGAGGAGGCAGAAAGTTAGCTATGAAAGTAAGGGTTTATAANNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAG TAAGTGTTTTTATCAATTTTTCAGTTCTCTATAATTTTTTGAAGTTTTGC ACCAAAAAATGACTTTTTCGCGACATTGTTTTTTCATATACCTTTTGTTT GGCTTCATAATTTCTGTCCAAAACAGTTTGAAGTACTCAGTTAAACATAT TTAGAAAGGGGAAAGGTAGGGCTTTCCAAAAATATAAGGGTTTTTTTCTG AAGTTAATTTTTCAAAAAGTTATAANNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGTTATA ACGGTTATCGTGAAAATTGCATTTTCATCAAAAAACGTTGCGCGCAGACG GGCTGAAGATATAAAAATGTTGCGCGCTGGAAAGGTTAAATGTGAAAGAA TCTTGATTTGGTTGGAATAGTTACATAACATGGAAAAGATTGAAGACAGT ATATGACGAAAATTCTTAGTACATAAAGTTTTTAAACAATAATACTTTTG AAAAATATGTTCTCTCTGAGATTTTAGTAATGGGGTAACCTTTAACATTT ACTCGGCTTAAACATACATTTTTTAACAGAACACAATATTTTGAAGATTA TCATCAAGTCAGGGGGGGGTATCGAGTCAGTGTACTGGNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTGTACTAAAA AGGGTGGTGGTCTAATTTTTTGGAAAAAAATCCAAAAATCAAGTTAGTAC CCTATGGTCCAGTACACTGACTTGGTACCCCCCCCTGATCAAGTCCTTGT AGCAATAATGAACGGTGAAATTTTATTGTAATCAGGAAATTTTACATGAT ATTTATAATAATGGGTCTTTATAATTGACCTTTTATTTAATTTTACTGAT AACCAAACCAATTAACTGACACAACTTCAACATAAAACACACATAGTTGG ACCCTTGACAAACCCTTTTCAACAATTTTCTTGCTTCTGTAGGTCGAGTG AAAAGACCCCCATCACTGGCGACAACAAGTAAGACTTCTATTTTGATATT AGGCAAGACCAATTTGATTAGTTGTTTTATGGGCCGGACCCGCCCAGAAA TTCCAAAAATAAAAATAAAAATCGACTGACCGACCCTCTTTTTTGGGTAG CTTGGCCCGCAAAACAACAAATTAAATTGGCCTCGTCTTACAGCTACTTT TTTGTTTAATTCCTAATCAGTGATAAATTTACCACTAGCATTTTTCTCAT GTGGGCAGATCTCGTCTTGCAACTATTACTTCTTTATGACTGAACTTTAT TTTCTGTTCAGGTTGCAGCAAACACAAAAGCAAGTTGACCAGGTTTGTTT TACTAATTTGTTTTTCCGTTTTGATTGACTAGAAAGGCATAAGTTCATTG AACAAATTTTTCTTAGTTATTTTCTGAATTGAAAAAACTTTTGATTTGAA TGAAAAAGACTTTCATACAACAGTGCTTTTAATCTAGGACTACAAAGTCT AGCCGAAAACCAATGATGTATGCTTTTATATTCTAGGTTGTTGATATAAT GCGACAAAACATGGACAAAGTTTTGGAAAGAGATTCTAAATTATCAGAAC TGGACAACCGTGCTGATGCTCTACAAGCAGGAGCTTCACAGTTCGAAACA AATGCTGGTAAATTAAAAAGGAAAATGTGGTGGCAGAATTGTAAAGTATG CTTGCTCTCTTTAAATATTCGTCCATTTGTACCTATATGCCACTTTTATG GTCTCAGTGNAAAGTATGCTCGCTCTCTTTAAATATTCGTCCATTTGTAC CTATATGCCACTTGTTAACACTTTTATGGTCTCAGTGGTATCCTACACAT TCTAAATCTAAAATCAAGTAAAAAGAACAATTCTTTTTCCAGAATTTCTC AATCAAAGAAAAACTGCTATTTTTTTAAGACACCTGTTTGAAAAGACTTG TTGTTATGTTCTAAGGCAAAATAAAGTACTAGAAAAAGTAATGAATAGAA TCGCTCAATCATCATTTACTCTTTCTTTTAGATGTGGATTATTCTCATTG TTGTAATTCTGGTTATCATTGCAATTATAGTCAGTAAGTAAATACTGTCC TCAATGAAAGCTACATTTGCTTAGTGCATTCTTGTGCAATCAAATCAATA TAATTTTCCCAATATATTAGGTTTTCACCTTGAAAGTGAATGGATGAGAT TTGCAGTACCTACTCTTTAAGCTATGAGTTCTAGAACTGCTCGAAAAGCT TGCAAACGATTCAAGTGGTTTTGGACCCATTCATTTTATTATGATATAAA TTTCCAGAGATATACCATACCAAGGGGGGATTGACCATGAAAAATGGAAT GATATACCTAGAAAAATCTTCATGTAAATTATGAAAATGAAAAATTCACT GAAAATTCTAGATATAATTAACCAAATCTTTCCATTCACAACTTTCCTTT AAAATCGTATAAACAAATTTCCGTCAGTCAAAATGGGTCCATTTTTTGAG CCTCACCAATTAGAATATCCCTGTTCAGGCTTTTCCAGGAAGAAATAAGT AGGTGAGCGACGAATCACTCACGTAACAAAGACAAAATTTTTACGAAATC ACGCACATGAACCAATCTTAGCGTGTGCGATTTTGTACAAAATGCCCTTA GATATTTTTCTATAGAATCAAAGTATAATTGATGTGCCCAATTTTTCGCT CATCATACGAGATTGACAAGTGTTTTACTAAAAGCGAGCGCGATCGCGCA TGTCTTATTGAAAAGCATGCCTGTTCAGCAATAATTTGAAATGGCCAAAA ATTCACCAAATTTACTGTTGGCATCATCAGCTGTACACCAAGATCTACAT TTTGCCATTGAATCATTCTAATTGAAAATGGTACAATTTATTGAATTTCA ATATCTAAATTACAAAATTATTAAGTTTGGCACTTTACTGCCTCAGCTGA AATATTGTGAAATATATGAAAAAAGTCCAATATATTTTAGATCGATTGTG GGGTTTTTCTGGTGGTTCTTGGAACCATAACTTATTTTGGTCAAATTTCA TATTATTTTCTTTACTTTTCTTTAGTTTGGGTTGTATCTACCAATTAGAA AATCATTATTGGAGTTGGAACACTGTACTTCTGTAGCACAACACTGATGA CAAAATGTTAGCTTTGGCTGGTCACTGGGGATATGATGGTATATATTTAC TTTGGCAGATGATATTCTTGATGTTGTGAAGGAAAATAAAATGTGGGGAG AAGACACAATTATACAAATTGTTCTCATGGAGTATTTTGTACATAGCTAT TTTTTTAATGTCGATATTGCAGTTTGTATAAGACCTTCTAAAAGATTGTT AATTATTATGTACAAAGCACACTTTTTGTTAGAAAGTGTTTGTGCGACAA CCTTTTTCTTCCATTTCTTTTGTTTTTATGTTCNTTTGTACAAAATGCCC TTAGATATTTTTCTATAGAATCAAAGTATAATTGATGTGCCCAATTTTTC GCTCATCATACGAGATTGACAAGTGTTTTACTAAAAGCGAGCGCGATCGC GCATGTCTTATTGAAAAGCATGCCTGTTCAGCAATAATTTGAAATGGCCA AAAATTCACCAAATTTACTGTTGGCATCATCAGCTGTACACCAAGATCTA CATTTTGCCATTGAATCATTCTAATTGAAAATGGTACAATTTATTGAATT TCAATGTCTAAATTACAAAATTATTAAGTTTGGCACTTTACTGCCTCAGC TGAAATATTGTGAAATATATGAAAAAAAGTCCAATATATTTTAGATCGAT TGTGGGGTTTTTCTGGTGGTTCTTGGAACCATAACTTATTTTGGTCAAAT TTCATATTATTTTCTTTACTTTTCTTTAGTTTGGGTTGTATCTACCAATT AGAAAATCATTATTGGAGTTGGAACACTGTACTTCTGTAGCACAACACTG ATGACAAAATGTTAGCTTTGGCTGGTCACTGGGGATATGATGGTATATAT TTACTTTGGCAGATGATATTCTTGATGTTGTGAAGGAAAATAAAATGTGG GGAGAAGACACAATTATACAAATTGTTCTCATGGAGTATTTTGTACATAG CTATTTTTTTAATGTCGATATTGCAGTTTGTATAAGACCTTCTAAAAGAT TGTTAATTATTATGTACAAAGCACACTTTTTGTTAGAAAGTGTTTGTGCG ACAACCTTTTTCTTCCATTTCTTTTGTTTTTATGTTCTTTTTTTTTTTCT TTTTATGCCAATCTGATGATTTACTTTTAGTTTATACTGTTTTTTACTGT TTATTTAATTTATTTGAAATTCAAAAACATAATTTGTAATCTTACACGTA GAAAAAATGTTTCACTAATTAGTATTATCACAATTTAGCTAGAATTGGAG AAAATATACTTCTGAAAGAATTCTTTAATTAGAACAACTGTTTTTGCAGG GTGTCGTCTGTGATTTTAAGTGCTTTGTGTGATGTATTTCTTTCTACTAG TATCTGCTGAAAAAAAACTGCACAAATTATTTAACACATTGCTACGTTTA TTATTTTGATTCTAGTTAAATTATAATAACATTAAATAATGGGTGCTTTG TGTATATTCTTTCATTACCAGAATTATATAATGAAATTAGAGGAAATTTA AAAATTGTTATCCTGAATTTTGCAATTATTTTTGATTTTTAAGACTTTCT TAATAATGACTGGAAGCTTCTTTATGTTTAAATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001940XLOC_001940Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003488-exon-sc0000028-1575043694:479855..479929TCONS_00003488-exon-sc0000028-1575043694:479855..479929Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1575043694:476602..476637TCONS_00003488-exon-sc0000028-1575043694:476602..476637Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1575043694:476288..476318TCONS_00003488-exon-sc0000028-1575043694:476288..476318Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1575043694:475935..476093TCONS_00003488-exon-sc0000028-1575043694:475935..476093Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1575043694:475547..475598TCONS_00003488-exon-sc0000028-1575043694:475547..475598Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1575043694:472894..473750TCONS_00003488-exon-sc0000028-1575043694:472894..473750Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1510915933:479855..479929TCONS_00003488-exon-sc0000028-1510915933:479855..479929Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1510915933:476602..476637TCONS_00003488-exon-sc0000028-1510915933:476602..476637Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1510915933:476288..476318TCONS_00003488-exon-sc0000028-1510915933:476288..476318Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1510915933:475935..476093TCONS_00003488-exon-sc0000028-1510915933:475935..476093Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1510915933:475547..475598TCONS_00003488-exon-sc0000028-1510915933:475547..475598Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1510915933:472894..473750TCONS_00003488-exon-sc0000028-1510915933:472894..473750Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1491911889:479855..479929TCONS_00003488-exon-sc0000028-1491911889:479855..479929Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1491911889:476602..476637TCONS_00003488-exon-sc0000028-1491911889:476602..476637Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1491911889:476288..476318TCONS_00003488-exon-sc0000028-1491911889:476288..476318Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1491911889:475935..476093TCONS_00003488-exon-sc0000028-1491911889:475935..476093Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1491911889:475547..475598TCONS_00003488-exon-sc0000028-1491911889:475547..475598Clytia hemisphaericaexon
TCONS_00003488-exon-sc0000028-1491911889:472894..473750TCONS_00003488-exon-sc0000028-1491911889:472894..473750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:472894..479929 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
81.8099 76.1152 75.1745 76.3766 14.3795 7.0587 27.0709 20.0165 29.8197 21.3712 22.1425 24.9755 13.5596 12.4329 13.5655 11.1405 12.6249 13.9394 12.2901 15.2002 41.0627 42.5441 52.6404 45.5265 6.26118 5.6416 60.334 46.8026 56.2763 51.3131
Blast
BLAST of TCONS_00003488 vs. Swiss-Prot (Human)
Match: VAMP3 (Vesicle-associated membrane protein 3 OS=Homo sapiens GN=VAMP3 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.689e-23
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 2
Query:   77 SSEKTPITGDNK-LXXXXXXXXXXXXIMRQNMDKVLERDSKLSELDNRADALQAGASQFETNAGKLKRKMWWQNCKM 304
            S+  T  TG N+ LQQTQ QVD+VVDIMR N+DKVLERD KLSELD+RADALQAGASQFET+A KLKRK WW+NCKM
Sbjct:    2 STGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKM 78          
The following BLAST results are available for this feature:
BLAST of TCONS_00003488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VAMP31.689e-2376.62Vesicle-associated membrane protein 3 OS=Homo sapi... [more]
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