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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003488 ID=TCONS_00003488|Name=TCONS_00003488|organism=Clytia hemisphaerica|type=transcript|length=1210bp ATTGTATCAAATAATCTCTAACACTTTCAGGTCCTACGAATCAACACCAA TCAGTAACTCTCCTTCACCGTATGGGTCGAGTGAAAAGACCCCCATCACT GGCGACAACAAGTTGCAGCAAACACAAAAGCAAGTTGACCAGGTTGTTGA TATAATGCGACAAAACATGGACAAAGTTTTGGAAAGAGATTCTAAATTAT CAGAACTGGACAACCGTGCTGATGCTCTACAAGCAGGAGCTTCACAGTTC GAAACAAATGCTGGtaaattaaaaaggaaaatgtgGTGGCAGAATTGTAA AATGTGGATTATTCTCATTGTTGTAATTCTGGTTATCATTGCAATTATAG TCATTTGGGTTGTATCTACCAATTAGAAAATCATTATTGGAGTTGGAACA CTGTACTTCTGTAGCACAACACTGATGACAAAATGTTAGCTTTGGCTGGT CACTGGGGATATGATGGTATATATTTACTTTGGCAGATGATATTCTTGAt gttgtgaaggaaaataaaatgTGGGGAGAAGACACAATTATACAAATTGT TCTCATGGAGTATTTTGTACATAGctatttttttaatgtcgatATTGCAG TTTGTATAAGACCTTCTAAAAGATTGTTAATTATTATGTACAAAGCACAC TTTTTGTTAGAAAGTGTTTGTGCGACAACctttttcttccatttcttttg tttttatgttctttttttttttctttttatgccAATCTGATGATTTACTT TTAGTTTATACTGTTTTTTActgtttatttaatttatttgaaattcaaaa acataatttgtAATCTTACACGTAGAAAAAATGTTTCACTAATTAGTATT ATCACAATTTAGCTAGAATTGGAGAAAATATACTTCTGAAAGAATTCTTT AATTAGAACAACTGTTTTTGCAGGGTGTCGTCTGTGATTTTAAGTGCTTT GTGTGATGTATTTCTTTCTACTAGTATCTGCTGAAAAAAAACTGCACAAA TTATTTAACACATTGCTACGTTTATTATTTTGATTCTAGTTAAATTATAA TAACATTAAATAATGGGTGCTTTGTGTATATTCTTTCATTACCAGAATTA TATAATGAAATTAgaggaaatttaaaaattgttatCCTGAATTTTgcaat tatttttgatttttaagactTTCTTAATAATGACTGGAAGCTTCTTTATG TTTAAATGGG Run BLAST on NCBI transcript from alignment at sc0000028:472894..479929- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003488 ID=TCONS_00003488|Name=TCONS_00003488|organism=Clytia hemisphaerica|type=transcript|length=7036bp|location=Sequence derived from alignment at sc0000028:472894..479929- (Clytia hemisphaerica) ATTGTATCAAATAATCTCTAACACTTTCAGGTCCTACGAATCAACACCAA
TCAGTAACTCTCCTTCACCGTATGGGTAACTAATTTACTAAACACTGAGT
TGAATCAGAACTAACAAAGTACATTTCAAGTTTACAATAAAGAACTTGCT
AATAATTAGATATAATTAACACTATAGATATGATTAACACTAAAGATACA
ATTAACACTATAGATACAATTAACACTATGATTATTGACATTTAAATATT
AAAACGGAACTTTAAATAACCAACCAACCTCCCCTAATGGCATTACTAAA
ATCTCAGACATATTTTAGGACTAAAATAATTGTCCTTGATTCATTGAACC
ATAACCCAATTTTAAAAATAGGTATGTTGATAAGTATGCAGGCCATTTTT
CATGCCCTTTAAGCGTCTGATTATCAGACGCTGCCCCTCTTGAAATTACT
AGAATATTGGTAAAAGCAGCCTTTTTAATGGAAAAACACTGGAACAAGCA
CTCTTTTTGGCCACCAACGGACGCTGCCTTACCTTTCTAAAATATGGCCT
GGTATGTACACATGTTTTAGCCGATCTTGAACCTAATTTTGCTCTGATTC
TCTCAAAAAGGAAACTTGAATATAAAACCCTGCACAGGTATTAACAGTAA
GGGTTCTACTTTTTAAATCGAGGAATTGCATGTCTTCAAAAAGTTCTTTA
ACCTTTCCGCCCCGAAAGACGTATCTGATACGTTCACCATACGTTCCGAA
AGACGTATCTGATACGTTTTTAAGGTAACCTTTATATTTGGTCGGATTAC
GCCCCAACCGTCAGAGGTACGGTAAAACCGATTAAAAAATCGGAATCAGC
GTGAAATTTCAGATAAGAAACAATCAGGGTTTGTTTTGCTATGACGCAAC
ATTTTTCAAAAATAGAAATGGTAGACCAAGCTGTGTTGCGTGATTTTGTG
AAACTGGAGGAGGCAGAAAGTTAGCTATGAAAGTAAGGGTTTATAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAG
TAAGTGTTTTTATCAATTTTTCAGTTCTCTATAATTTTTTGAAGTTTTGC
ACCAAAAAATGACTTTTTCGCGACATTGTTTTTTCATATACCTTTTGTTT
GGCTTCATAATTTCTGTCCAAAACAGTTTGAAGTACTCAGTTAAACATAT
TTAGAAAGGGGAAAGGTAGGGCTTTCCAAAAATATAAGGGTTTTTTTCTG
AAGTTAATTTTTCAAAAAGTTATAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGTTATA
ACGGTTATCGTGAAAATTGCATTTTCATCAAAAAACGTTGCGCGCAGACG
GGCTGAAGATATAAAAATGTTGCGCGCTGGAAAGGTTAAATGTGAAAGAA
TCTTGATTTGGTTGGAATAGTTACATAACATGGAAAAGATTGAAGACAGT
ATATGACGAAAATTCTTAGTACATAAAGTTTTTAAACAATAATACTTTTG
AAAAATATGTTCTCTCTGAGATTTTAGTAATGGGGTAACCTTTAACATTT
ACTCGGCTTAAACATACATTTTTTAACAGAACACAATATTTTGAAGATTA
TCATCAAGTCAGGGGGGGGTATCGAGTCAGTGTACTGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTGTACTAAAA
AGGGTGGTGGTCTAATTTTTTGGAAAAAAATCCAAAAATCAAGTTAGTAC
CCTATGGTCCAGTACACTGACTTGGTACCCCCCCCTGATCAAGTCCTTGT
AGCAATAATGAACGGTGAAATTTTATTGTAATCAGGAAATTTTACATGAT
ATTTATAATAATGGGTCTTTATAATTGACCTTTTATTTAATTTTACTGAT
AACCAAACCAATTAACTGACACAACTTCAACATAAAACACACATAGTTGG
ACCCTTGACAAACCCTTTTCAACAATTTTCTTGCTTCTGTAGGTCGAGTG
AAAAGACCCCCATCACTGGCGACAACAAGTAAGACTTCTATTTTGATATT
AGGCAAGACCAATTTGATTAGTTGTTTTATGGGCCGGACCCGCCCAGAAA
TTCCAAAAATAAAAATAAAAATCGACTGACCGACCCTCTTTTTTGGGTAG
CTTGGCCCGCAAAACAACAAATTAAATTGGCCTCGTCTTACAGCTACTTT
TTTGTTTAATTCCTAATCAGTGATAAATTTACCACTAGCATTTTTCTCAT
GTGGGCAGATCTCGTCTTGCAACTATTACTTCTTTATGACTGAACTTTAT
TTTCTGTTCAGGTTGCAGCAAACACAAAAGCAAGTTGACCAGGTTTGTTT
TACTAATTTGTTTTTCCGTTTTGATTGACTAGAAAGGCATAAGTTCATTG
AACAAATTTTTCTTAGTTATTTTCTGAATTGAAAAAACTTTTGATTTGAA
TGAAAAAGACTTTCATACAACAGTGCTTTTAATCTAGGACTACAAAGTCT
AGCCGAAAACCAATGATGTATGCTTTTATATTCTAGGTTGTTGATATAAT
GCGACAAAACATGGACAAAGTTTTGGAAAGAGATTCTAAATTATCAGAAC
TGGACAACCGTGCTGATGCTCTACAAGCAGGAGCTTCACAGTTCGAAACA
AATGCTGGTAAATTAAAAAGGAAAATGTGGTGGCAGAATTGTAAAGTATG
CTTGCTCTCTTTAAATATTCGTCCATTTGTACCTATATGCCACTTTTATG
GTCTCAGTGNAAAGTATGCTCGCTCTCTTTAAATATTCGTCCATTTGTAC
CTATATGCCACTTGTTAACACTTTTATGGTCTCAGTGGTATCCTACACAT
TCTAAATCTAAAATCAAGTAAAAAGAACAATTCTTTTTCCAGAATTTCTC
AATCAAAGAAAAACTGCTATTTTTTTAAGACACCTGTTTGAAAAGACTTG
TTGTTATGTTCTAAGGCAAAATAAAGTACTAGAAAAAGTAATGAATAGAA
TCGCTCAATCATCATTTACTCTTTCTTTTAGATGTGGATTATTCTCATTG
TTGTAATTCTGGTTATCATTGCAATTATAGTCAGTAAGTAAATACTGTCC
TCAATGAAAGCTACATTTGCTTAGTGCATTCTTGTGCAATCAAATCAATA
TAATTTTCCCAATATATTAGGTTTTCACCTTGAAAGTGAATGGATGAGAT
TTGCAGTACCTACTCTTTAAGCTATGAGTTCTAGAACTGCTCGAAAAGCT
TGCAAACGATTCAAGTGGTTTTGGACCCATTCATTTTATTATGATATAAA
TTTCCAGAGATATACCATACCAAGGGGGGATTGACCATGAAAAATGGAAT
GATATACCTAGAAAAATCTTCATGTAAATTATGAAAATGAAAAATTCACT
GAAAATTCTAGATATAATTAACCAAATCTTTCCATTCACAACTTTCCTTT
AAAATCGTATAAACAAATTTCCGTCAGTCAAAATGGGTCCATTTTTTGAG
CCTCACCAATTAGAATATCCCTGTTCAGGCTTTTCCAGGAAGAAATAAGT
AGGTGAGCGACGAATCACTCACGTAACAAAGACAAAATTTTTACGAAATC
ACGCACATGAACCAATCTTAGCGTGTGCGATTTTGTACAAAATGCCCTTA
GATATTTTTCTATAGAATCAAAGTATAATTGATGTGCCCAATTTTTCGCT
CATCATACGAGATTGACAAGTGTTTTACTAAAAGCGAGCGCGATCGCGCA
TGTCTTATTGAAAAGCATGCCTGTTCAGCAATAATTTGAAATGGCCAAAA
ATTCACCAAATTTACTGTTGGCATCATCAGCTGTACACCAAGATCTACAT
TTTGCCATTGAATCATTCTAATTGAAAATGGTACAATTTATTGAATTTCA
ATATCTAAATTACAAAATTATTAAGTTTGGCACTTTACTGCCTCAGCTGA
AATATTGTGAAATATATGAAAAAAGTCCAATATATTTTAGATCGATTGTG
GGGTTTTTCTGGTGGTTCTTGGAACCATAACTTATTTTGGTCAAATTTCA
TATTATTTTCTTTACTTTTCTTTAGTTTGGGTTGTATCTACCAATTAGAA
AATCATTATTGGAGTTGGAACACTGTACTTCTGTAGCACAACACTGATGA
CAAAATGTTAGCTTTGGCTGGTCACTGGGGATATGATGGTATATATTTAC
TTTGGCAGATGATATTCTTGATGTTGTGAAGGAAAATAAAATGTGGGGAG
AAGACACAATTATACAAATTGTTCTCATGGAGTATTTTGTACATAGCTAT
TTTTTTAATGTCGATATTGCAGTTTGTATAAGACCTTCTAAAAGATTGTT
AATTATTATGTACAAAGCACACTTTTTGTTAGAAAGTGTTTGTGCGACAA
CCTTTTTCTTCCATTTCTTTTGTTTTTATGTTCNTTTGTACAAAATGCCC
TTAGATATTTTTCTATAGAATCAAAGTATAATTGATGTGCCCAATTTTTC
GCTCATCATACGAGATTGACAAGTGTTTTACTAAAAGCGAGCGCGATCGC
GCATGTCTTATTGAAAAGCATGCCTGTTCAGCAATAATTTGAAATGGCCA
AAAATTCACCAAATTTACTGTTGGCATCATCAGCTGTACACCAAGATCTA
CATTTTGCCATTGAATCATTCTAATTGAAAATGGTACAATTTATTGAATT
TCAATGTCTAAATTACAAAATTATTAAGTTTGGCACTTTACTGCCTCAGC
TGAAATATTGTGAAATATATGAAAAAAAGTCCAATATATTTTAGATCGAT
TGTGGGGTTTTTCTGGTGGTTCTTGGAACCATAACTTATTTTGGTCAAAT
TTCATATTATTTTCTTTACTTTTCTTTAGTTTGGGTTGTATCTACCAATT
AGAAAATCATTATTGGAGTTGGAACACTGTACTTCTGTAGCACAACACTG
ATGACAAAATGTTAGCTTTGGCTGGTCACTGGGGATATGATGGTATATAT
TTACTTTGGCAGATGATATTCTTGATGTTGTGAAGGAAAATAAAATGTGG
GGAGAAGACACAATTATACAAATTGTTCTCATGGAGTATTTTGTACATAG
CTATTTTTTTAATGTCGATATTGCAGTTTGTATAAGACCTTCTAAAAGAT
TGTTAATTATTATGTACAAAGCACACTTTTTGTTAGAAAGTGTTTGTGCG
ACAACCTTTTTCTTCCATTTCTTTTGTTTTTATGTTCTTTTTTTTTTTCT
TTTTATGCCAATCTGATGATTTACTTTTAGTTTATACTGTTTTTTACTGT
TTATTTAATTTATTTGAAATTCAAAAACATAATTTGTAATCTTACACGTA
GAAAAAATGTTTCACTAATTAGTATTATCACAATTTAGCTAGAATTGGAG
AAAATATACTTCTGAAAGAATTCTTTAATTAGAACAACTGTTTTTGCAGG
GTGTCGTCTGTGATTTTAAGTGCTTTGTGTGATGTATTTCTTTCTACTAG
TATCTGCTGAAAAAAAACTGCACAAATTATTTAACACATTGCTACGTTTA
TTATTTTGATTCTAGTTAAATTATAATAACATTAAATAATGGGTGCTTTG
TGTATATTCTTTCATTACCAGAATTATATAATGAAATTAGAGGAAATTTA
AAAATTGTTATCCTGAATTTTGCAATTATTTTTGATTTTTAAGACTTTCT
TAATAATGACTGGAAGCTTCTTTATGTTTAAATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00003488-exon-sc0000028-1575043694:479855..479929 | TCONS_00003488-exon-sc0000028-1575043694:479855..479929 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1575043694:476602..476637 | TCONS_00003488-exon-sc0000028-1575043694:476602..476637 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1575043694:476288..476318 | TCONS_00003488-exon-sc0000028-1575043694:476288..476318 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1575043694:475935..476093 | TCONS_00003488-exon-sc0000028-1575043694:475935..476093 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1575043694:475547..475598 | TCONS_00003488-exon-sc0000028-1575043694:475547..475598 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1575043694:472894..473750 | TCONS_00003488-exon-sc0000028-1575043694:472894..473750 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1510915933:479855..479929 | TCONS_00003488-exon-sc0000028-1510915933:479855..479929 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1510915933:476602..476637 | TCONS_00003488-exon-sc0000028-1510915933:476602..476637 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1510915933:476288..476318 | TCONS_00003488-exon-sc0000028-1510915933:476288..476318 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1510915933:475935..476093 | TCONS_00003488-exon-sc0000028-1510915933:475935..476093 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1510915933:475547..475598 | TCONS_00003488-exon-sc0000028-1510915933:475547..475598 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1510915933:472894..473750 | TCONS_00003488-exon-sc0000028-1510915933:472894..473750 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1491911889:479855..479929 | TCONS_00003488-exon-sc0000028-1491911889:479855..479929 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1491911889:476602..476637 | TCONS_00003488-exon-sc0000028-1491911889:476602..476637 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1491911889:476288..476318 | TCONS_00003488-exon-sc0000028-1491911889:476288..476318 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1491911889:475935..476093 | TCONS_00003488-exon-sc0000028-1491911889:475935..476093 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1491911889:475547..475598 | TCONS_00003488-exon-sc0000028-1491911889:475547..475598 | Clytia hemisphaerica | exon |
TCONS_00003488-exon-sc0000028-1491911889:472894..473750 | TCONS_00003488-exon-sc0000028-1491911889:472894..473750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000028 | supercontig | sc0000028:472894..479929 - |
Blast
BLAST of TCONS_00003488 vs. Swiss-Prot (Human)
Match: VAMP3 (Vesicle-associated membrane protein 3 OS=Homo sapiens GN=VAMP3 PE=1 SV=3) HSP 1 Score: 94.7449 bits (234), Expect = 1.689e-23 Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 2
Query: 77 SSEKTPITGDNK-LXXXXXXXXXXXXIMRQNMDKVLERDSKLSELDNRADALQAGASQFETNAGKLKRKMWWQNCKM 304
S+ T TG N+ LQQTQ QVD+VVDIMR N+DKVLERD KLSELD+RADALQAGASQFET+A KLKRK WW+NCKM
Sbjct: 2 STGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKM 78
The following BLAST results are available for this feature:
|