|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003640 ID=TCONS_00003640|Name=TCONS_00003640|organism=Clytia hemisphaerica|type=transcript|length=4200bpRun BLAST on NCBI protein sequence of TCONS_00003640-protein >TCONS_00003640-protein ID=TCONS_00003640-protein|Name=TCONS_00003640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1285bp MRGGLFLCLSFISTLLGCAYGNNTIHNVTITNNLPTQYNILWFDELITLLRun BLAST on NCBI transcript from alignment at sc0000030:468872..485173- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003640 ID=TCONS_00003640|Name=TCONS_00003640|organism=Clytia hemisphaerica|type=transcript|length=16302bp|location=Sequence derived from alignment at sc0000030:468872..485173- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:468872..485173- >TCONS_00003640 ID=TCONS_00003640|Name=TCONS_00003640|organism=Clytia hemisphaerica|type=CDS|length=65586bp|location=Sequence derived from alignment at sc0000030:468872..485173- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003640 vs. Swiss-Prot (Human)
Match: AGRG4 (Adhesion G-protein coupled receptor G4 OS=Homo sapiens GN=ADGRG4 PE=2 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 4.056e-35 Identity = 113/417 (27.10%), Postives = 197/417 (47.24%), Query Frame = 2
Query: 2459 IASIEIPHEVFSKILLNRGAEEVTLVSVGYRESKLFSRLNKSNQDFHINSCVMSAEFRHQK-IDRLQIPVILKFRTSKMNMIDGSKDLVCSFW----NETTQRWSNNGMSSEASQTRDKNFTTCQSTHLTNFAVFLRGSKP-IEEEHETALTYISYIGLGISVCGDLLTILTFAIFPTLRENAQPKILINLCLALVLMSVTFV----YSGFRLTDDPTECKGIAFLMQYFLLTVFSWSLVEAFHTSRGIISPLKVKINSFLWKTSLVAWGTPLIYTGIIFTIFYEQYG----IGQLCFMEPSLALYIGIILPVCLALFINVVALCFIMRALTKKKAIKRNMSKEERNQALHRLRIILIFCCIFSLTWLTGIPMLFTNDI--LFQYTFCIINSLQGCYIFITYCLRNKTVLKYWKMFL 3661
+ASI +P + +I L+ T++ + ++ LF N + + + V+SA I L PV++ + N G + C+FW N W+++G + + + N+T CQ HLT+F V + S+ ++ +E L I+Y G GIS + ++T+ F LR++ KILINLC AL+++++ F+ S F+ C A + YFLL F+W +EA H ++ + I +++ K LV WG P I I ++ + YG C+++ YI ++ CL +N+ C ++ L ++K + K R LH L+ + + LTW G + F Y F I N+LQG +IF+ +C+ ++V + W++ L
Sbjct: 2604 LASIYLPKSLTERIPLSNLQ---TILFNFFGQTSLFKTKNVTKA---LTTYVVSASISDDMFIQNLADPVVITLQHIGGNQNYG--QVHCAFWDFENNNGLGGWNSSGCKVKET---NVNYTICQCDHLTHFGVLMDLSRSTVDSVNEQILALITYTGCGISSIFLGVAVVTYIAFHKLRKDYPAKILINLCTALLMLNLVFLINSWLSSFQKVG---VCITAAVALHYFLLVSFTWMGLEAVHMYLALVKVFNIYIPNYILKFCLVGWGIPAIMVAITVSVKKDLYGTLSPTTPFCWIKDDSIFYISVVAYFCLIFLMNLSMFCTVLVQL---NSVKSQIQKTRRKMILHDLKGTMSLTFLLGLTW--GFAFFAWGPMRNFFLYLFAIFNTLQGFFIFVFHCVMKESVREQWQIHL 3001 The following BLAST results are available for this feature:
BLAST of TCONS_00003640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.