TCONS_00003560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003560
Unique NameTCONS_00003560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003560 ID=TCONS_00003560|Name=TCONS_00003560|organism=Clytia hemisphaerica|type=transcript|length=1696bp
ctgggtttctgatcagagactctttcatttggtgggttcgaatcccggtc
gggtcgatatttggagaaagtttgaaatatcaaattcatagaaaagttag
tagaaatcGgaaaacaagtctcagaaagtcagaaaatagaaaaggagata
gagagataggaagtagaaaaacaGAAGAGTGATGTTCGATTGACGGTCAA
TTTCTATCACCTTCCCGGAATTTCATTAGCGCGCGGAAAAAACTTAAAGT
TTCTTGAATTATTATTTATAACCCAGACTCAAGTGTAAACAGTTTATTAG
GTCACAATTAGTGTTTTCATAAATTAATTGCTGaatttaagttttattta
aGTATTACAACACAATTGATTTTAGTTAAATTTCTAAAATCATCAATTTA
TATGAAACAGGTATATAGTTACTCAAAATTACAAGTCTGTAAAATGTACA
ATCCATTGTTTACATCTGATGATAATGGATGAGATCTAACACGGGCTGTA
AACAAAAGCTCCAAAATTTCCACATCATCAGTCACTTTTCACTCTTTTCC
ACAGTCAAATCAGAGTGACGAAGTGACGAAGGCTGAAATTTTCTCGACAA
AATGAAGGCAATTTTCCTTCTTGCCAGTCTTCTCCTGGTATCATTATGTA
AAGCTGAGTACAAATCTGCAAGACTCGAGacTTGTGGTGGGTGACGATTG
AACCGCCTTCCTAAGGTGAAGGCTTTCATCAATGATCATGCCAATCTTTA
ccaaaattttcaagtaaAATATATTGGTGGTGCAGATCCTGAACTCGTTT
TTGTCAAAAATGACGATTCAGAAGAGCGAATTGCAGTAGCAGATATGGAC
ACAGAGAAAATCTGTGAAACGGTTGAATCGAAAGGATTCACAAAGAAGGA
ACAAGAAGATGTTCCACCACCCCCTCACGATGACGAATTGTAAATAACTA
AAACTTTTAAGTGCATTTTCGTATAAAATATCCCATAGATTTCTCGTGgc
agtttttaaaaacattcatCAAATTTACTAAGTTTTATATTTCATTTGTC
CAATTTTactactttttaaaaaatgacgtttcGTTGTATTCTTTGTATGG
ATTTGACAGAAAACTATAAATTCTCAGGGTTCATGTGTCTGGAAAAATAG
tgatataattttatttttaggttTAGTTCAATTTTGTATTTGTATTTGTA
GAGATTTGTACGTCACTGTTTTTCCAGGTGCATAATAATGCCTGAGCTTT
TGCTTTTAAAAATTGCCACAAGATCATCTATATTGGGGACgaacaatata
tttttttactttattcaTATTTGGAAAAGTTCTATGATGAATTTATAGTC
AACCCAATTTTAGGACACTGTAAGTTTTGATATCCAGTTTAGTATAAact
tttataactttttttatggatttagaaaaataaatttgtttgaacATAAT
ATTATTTACTCTTTCCATTCGAGTCCATCTTATTCTCAGttaattattat
atttttatagtGCATCTGAGTGCATTCATATAAGCTAGTAATAAGGATTT
AAATAAAACGCCCTTTAAAAATGTTTCTCCTTTTCTAAGAGTTAAATGTG
TCTTAAAATGTGCTTAAATACTCCTTCAGAGTCTAGTTTTCTAGGACACT
ATGTATATCAATATTGtctttaagcttttttcacatgtacgtaaaa
Run BLAST on NCBI

transcript from alignment at sc0000030:527783..537202+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003560 ID=TCONS_00003560|Name=TCONS_00003560|organism=Clytia hemisphaerica|type=transcript|length=9420bp|location=Sequence derived from alignment at sc0000030:527783..537202+ (Clytia hemisphaerica)
ctgggtttctgatcagagactctttcatttggtgggttcgaatcccggtc
gggtcgatatttggagaaagtttgaaatatcaaattcatagaaaagttag
tagaaatcGgaaaacaagtctcagaaagtcagaaaatagaaaaggagata
gagagataggaagtagaaaaacaGAAGAGTGATGTTCGATTGACGGTCAA
TTTCTATCACCTTCCCGGAATTTCATTAGCGCGCGGAAAAAACTTAAAGT
TTCTTGAATTATTATTTATAACCCAGACTCAAGTGTAAACAGTTTATTAG
GTCACAATTAGTGTTTTCATAAATTAATTGCTGaatttaagttttattta
aGTATTACAACACAATTGATTTTAGTTAAATTTCTAAAATCATCAATTTA
TATGAAACAGGTATATAGTTACTCAAAATTACAAGTCTGTAAAATGTACA
ATCCATTGTTTACATCTGATGATAATGGATGAGATCTAACACGGGCTGTA
AACAAAAGCTCCAAAATTTCCACATCATCAGTCACTTTTCACTCTTTTCC
ACAGTCAAATCAGAGTGACGAAGTGACGAAGGCTGAAATTTTCTCGACAA
AATGAAGGCAATTTTCCTTCTTGCCAGTCTTCTCCTGGTATCATTATGTA
AAGCTGAGTACAAATCTGCAAGACTCGAGGTAAAAGCTTCAGCTTCTTCT
CTTCTTCCAGGGGGGTTTGAGCTTTTGGATTTTCCCACCAAGATGTTTTT
GTTgttcattttttataatttccaaGGGGATCATTAAGGTTTTGATGCCC
TTCCAGGAGTTATTAAAGATTTCCAGTGGGTTCTTTTCGTTCGTTCTTTT
CACTTGAGGTGgcataaaaagttattttccagcccctttttcacaaaatt
ttacttTCCACAGAGGGTTCTTCCCCCTAATTTTCTAGGGGATATATTCA
GGCGTACCCAATCGATAACATCGATTGTGGATTTAATCGATGTCAATCGA
TAAAAGTCGTTCGTAATCGATGATCGATCGATTACTAATCGATGGCCGAT
CGATAGGaacgtaaaattttattatcgaTTGGTATCGATGTTCATCGATT
AAATTCGATTATTATTAGCCATCGATTGAATTCGATTGTTATTGATTAAG
ATCGATTGCGATCGATTGTGCTAATTTTCTGTATGTATGATCGCTACTCT
GTGTggtgtaccagagtgtatctcacgataaTATGGTAGCgtactttaag
ggaagaaattttcgcgaaatttaatttcgcggttttctgAACTTGACCAC
GAAACCGCGAAATTATCATGCAATAAAGTATTTCGACGGCCGGATGACTA
TTCTGACGACCAATTTTCCACCGGTCGGTGGACGACTATCCACCGACCGA
ATAACTATCTCGATGGCCGAATTTCCCGCAATTCTAACCCTCTTGGCGAT
CAGGGCTTGGGTAGAATCACACAAACAAATCACTGTATTAATCGGATTAA
TGCACAGGGGAATAGGAATGGCCAAATACCATGTACCGTGGTTTATCTAA
TTTAACGCGTAGTCTAATTTAACGCGTACCCTGTTATGGCGAAAAATCGT
AATTAATCTTACTCTAATTATTAACACGTagccaaaattctgcataatta
atTTCACTCTAATTATTACGCGTGATCAAGCcttgtaccgtgaaaagcac
aggtcaaaatcatatattgacgctgtgccgacgaatcgatattctattca
tcgcgcaatcaacgaagacaaaagtaaccatgccgaccatccaagatctt
ggatgaagttcaaagttgatatttttattcccgtcgttaaaaacacaaca
aaaaatatcatcaatgctttttaaaaagagtcagtgatagagaatcataa
cataaagtctgtctattatttcgattcaattaaaagtgacatttccataa
ttactAGTTTattaattactgttatacatttggggattatgtaaaagatt
tctttcgaaagaaattcacttcgattacacttggaggtttctggggaatt
cgtaaatagtaaactgcatacggatacagtctgctagacattaataaggt
aatatttgctcttcatctttgattctttctacagtgattagattgacaca
tgcgcgataaaatttctattattggtcttcagaggttaatatattctttg
aaaacttaacctctgatactcagggtacaagCCTTGGACAAGAAAAATTA
GACaggaaagttttatttttgataaacttctttctttcaaaaacacaaat
taAAGGGATCTTCGTCATCCTCCTCTGGCTCCTCCAAATCAGCTAATGCT
TGTTAATACATTATACAATCTATATGTAATATATATTACACTGGCCTTTA
ACGCGTACTTAAAACACTTGAATATTGTAAGTAATTGTTCTCTAGTTTTT
CACGCGTATCAGCgtcgaaaataattatttattgccacacgttaaattag
aaaaaccacggTAGGGTTGCGTTTTTAGCGAATATAAAGAAATCGATATT
GCTATCGCAATCGATAACAATCAAATCCAATCGATAAGAACGTAAAGTCT
TGGTATCGATTGGCTATCGATTGCTTatcgattagttatcgatcactatc
gattattatcgattaaaatcaattaatatcgattgatttcccgtatcgat
ttcatcgattgggtacgcctggatatataaataaattccattcaaaattt
tcagggggattgatttctatttctatttttctatttttatatcagtcagg
cacatcctggcaaatgaacggggtatttttcacttgcgaccattggcaat
gaacggggtcgaaaatgaaagtgacgtaatagcgcagaatacccagttta
attgaaccggttggaaatattttgcttcatttcaaagaactgcatagatg
aaattttccatgtgtcaattttgtcttcgaagattgaagaaacttttaat
gaaaaaataaagttcccagttttcttccttttttctttttttcagtttga
agttcatttttattcattttcacgcttttagcctgagacgtcctatctca
tttacactgggtgacgaataccccatgcNACTCCAAAACATATAATAAAA
GATATGAAGATTCTTTATACAAATCCAGATCAGTTAACATCgtttaagaa
aaaagaattacaGTCCATAGCCCGGGAAGANcatttgccaggatgtgcct
gactgtataTTAGCATgaattttttccgagttattttcgcTGATGgaaca
ataacaaaaaatttctttaaaaaatcaaaaaatctgtaTTTTTTCACCTA
AACTAGAGCTCTAATCCACTATTCCTCAACATTTCCGGATGGACGAGGAC
ACTACAGCCGACACCTCCATAGACGATNATTCGATGACTACAAAATCGCT
AGCCAAGTTAACCTAGATACAGATCAAGGGCGTGGCATTGTCATATTTGT
CCATATATCCATTAAACACTTGGTAATAGATGTCAAGCCTCCAGTGATTT
TCAATGAAGTTTGCATGATTGAAGTACAACTATCAGGAAAAGATTTGCTC
GCTGTTGCATGCATTTATCGAAGCCCAACTAGATCTACGTCCTCCaacga
aaacaacaacaacctaAACTTATTGATCAAGTCCATTGcattaaacaaga
aatattCGCACAAATGTTTGTTAGGTTATTTAACTTTCCAACAATCAATT
GGGAAAACTGGACCACCCCGCATCTGGAGGATAGCAAAGAAGAGAAATTC
TTAAATGCTTTGAGAGACGCACATCTCCATCAACATGTTAATGAACCAAC
TCGATGTAGAGGAACTGATGACCCATCCCTCATCGACTTGATCTTAACAG
GCGAAGAAAACCAAATTAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNaaaaaaataataaataaatgaaaaaa
tattaagtaaggagcaaaaaaaaatgtatatagTGTTTTCCGGAAACTGG
CCATTTCTGACTCGGCCGTAGACTATGGCTTCATCTATATCATTCATCAT
AAAGgaaatcaagttgaccgttcaagtTCGTTgtacatgaattttttttg
gaatagcctaATAAAGGGAATAGATATAGGCCACTCCAATTGTTTCAAGT
GGTTTCAATATATACTAAATTTTGCGTCTCACTGgctttttattcttatt
ttcagacTTGTGGTGGGTGACGATTGAACCGCCTTCCTAAGGTAATAAAT
TCTCNAAAAAAGATCTCGGTGTTCTGATAGACTCTGACTTATCCTTTGAA
GAACACATATCAAACCAAGTGAAAAAAGCTAATTCCATTCTAGGAGTCAT
CAGAAGAGGTTTCGAAGACCTTAgcctttaaaactttcttcactCTGTAC
ACAACCTTTGTCCGGCCTCATCTCGAGTATGCCCAATCTGTATGGTCACC
AAAACTACGTAAGGACATCAACTTGATTGAGGGCGTTCAACGACGTGCCA
CTGGGATGGTCAGAAGGTTAAGTAATCTAGCATACGAGCAGCGCCTACGA
AAACTTGACTTGCCTTCTCTCGAATTCAGAAGACACTTCGGAGACATGGT
TCAGATCTACAAACACTTGCACNCTTACTACTTCTTACCTTGTAAtactt
tgtttttgattttgtactttATGATACTCATCCAATTTGTGGAATCTGAT
GATTTGAGGAATACTATATTAATCTTTAATCTTAATTTTATgaggaaaaa
cttttaaacaccGTACATAGTCAGATAGGggaaaattgagttttgattta
acttgTGCATCATATATTTTTGCTGTATTCCATGGAATATGCAGCTATTT
ATATTTAATACTAATCTTTTATAGGTGAAGGCTTTCATCAATGATCATGC
CAATCTTTAGtatcttttcaaagaaaacttATATTTTAATGGTAATTGAT
AAGTTTAAAAGTCTCAAAATTTTTGTGCCTCTCAAATAACAGACCTTTGG
CTATACACTTACATCCTAAATGGACCAATTGTTACTGTGTTGGTGCTACA
GCCCTCAAATTAGGCCCAAAATGgtccttggaaaaaagtaggattataTT
GTAATGGAACAATGATATATAGCTCTCTCATACACACAAATAGCAAAAAA
CTAGTTTTCAGGTCAACATTTGGCTGAAAACtgctaaaaatgacattttg
cctgagtgaaaagtttgaaatatgTTGTGTTGGTGTTACAACCCTAAAAT
TGGACacaaaatgttccttggagAAAAGTAGAATTGTAACAGTTAAATAT
CGtacacaaaaaattcaaaaaattgtgatttatggggcaaaattgaccaa
aaactGGAAAATGGGGTTTTGCCTGAGAAACAATATAATCTGAAATCTTT
TCTGATGGTGCCAAAAAGCAGAAATTAGACTTCGAATGCTCTTTGTAATA
AACTAGGATTATGATACATATAccaattgtattttaagctcatTATCATA
CATGTAACTATGAAAGATTTTCAGGTTAAACTGactgaaaaatgcaaaaa
atgggGTGTTCTGCCTGCGAAAATGTAATGTTCAAAACCCACTTAGAAAA
TTTAGGATTATAGATCTTCTGAAAATTCCCTCAATACCACGCAACACCTG
CAGCATTTTTAAGTGGGTTGGACAAAAAGGTCAATGTCTGACTTGTATCT
CATATTTCCTTAAAGATATCACCTAGAATCAGTATtctttatcatatttt
ttcttAACTGtccttttttataaataaagccaaaattttcaagtaaAATA
TATTGGTGGTGCAGATCCTGAACTCGTTTTTGTCAAAAATGACGATTCAG
AAGAGGTATACAAATTTTAGGCTTTATTCTCGATATATTTGAATCTCTCA
AATCTACTTTAGGAGTCAAATTTAGGGGTCTATTCATGATTAAATTTATT
CCTAGTCAAATGTTCAGTCAAATAACAAAGGTACTTTGCAACTTGTTAAA
AACTTGCTAAATCTCCTATAAGTGTTTTCATTGAAAggtaaagattttat
tttaagaaatatattCTAGCAATAACTATGTTATATTGATTTTTCTCCAG
CGAATTGCAGTAGCAGATATGGACACAGAGAAAATCTGTGAAACGGTTGA
ATCGAAAGGATTCACAAAGAAGGAACAAGAAGATGTTCCACCACCCCCTC
ACGATGACGAATTGTAAATAACTAAAACTTTTAAGTGCATTTTCGTATAA
AATATCCCATAGATTTCTCGTGgcagtttttaaaaacattcatCAAATTT
ACTAAGTTTTATATTTCATTTGTCCAATTTTactactttttaaaaaatga
cgtttcGTTGTATTCTTTGTATGGATTTGACAGAAAACTATAAATTCTCA
GGGTTCATGTGTCTGGAAAAATAGtgatataattttatttttaggttTAG
TTCAATTTTGTATTTGTATTTGTAGAGATTTGTACGTCACTGTTTTTCCA
GGTGCATAATAATGCCTGAGCTTTTGCTTTTAAAAATTGCCACAAGATCA
TCTATATTGGGGACgaacaatatatttttttactttattcaTATTTGGAA
AAGTTCTATGATGAATTTATAGTCAACCCAATTTTAGGACACTGTAAGTT
TTGATATCCAGTTTAGTATAAacttttataactttttttatggatttaga
aaaataaatttgtttgaacATAATATTATTTACTCTTTCCATTCGAGTCC
ATCTTATTCTCAGttaattattatatttttatagtGCATCTGAGTGCATT
CATATAAGCTAGTAATAAGGATTTAAATAAAACGCCCTTTAAAAATGTTT
CTCCTTTTCTAAGAGTTAAATGTGTCTTAAAATGTGCTTAAATACTCCTT
CAGAGTCTAGTTTTCTAGGACACTATGTATATCAATATTGtctttaagct
tttttcacatgtacgtaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001988XLOC_001988Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003560-exon-sc0000030-1491911889:527783..528461TCONS_00003560-exon-sc0000030-1491911889:527783..528461Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1510915933:527783..528461TCONS_00003560-exon-sc0000030-1510915933:527783..528461Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1575043694:527783..528461TCONS_00003560-exon-sc0000030-1575043694:527783..528461Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1491911889:534438..534473TCONS_00003560-exon-sc0000030-1491911889:534438..534473Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1510915933:534438..534473TCONS_00003560-exon-sc0000030-1510915933:534438..534473Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1575043694:534438..534473TCONS_00003560-exon-sc0000030-1575043694:534438..534473Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1491911889:535107..535141TCONS_00003560-exon-sc0000030-1491911889:535107..535141Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1510915933:535107..535141TCONS_00003560-exon-sc0000030-1510915933:535107..535141Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1575043694:535107..535141TCONS_00003560-exon-sc0000030-1575043694:535107..535141Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1491911889:536012..536087TCONS_00003560-exon-sc0000030-1491911889:536012..536087Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1510915933:536012..536087TCONS_00003560-exon-sc0000030-1510915933:536012..536087Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1575043694:536012..536087TCONS_00003560-exon-sc0000030-1575043694:536012..536087Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1491911889:536333..537202TCONS_00003560-exon-sc0000030-1491911889:536333..537202Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1510915933:536333..537202TCONS_00003560-exon-sc0000030-1510915933:536333..537202Clytia hemisphaericaexon
TCONS_00003560-exon-sc0000030-1575043694:536333..537202TCONS_00003560-exon-sc0000030-1575043694:536333..537202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:527783..537202 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.4902	12.1224	11.2013	10.3397	17.7479	12.3912	30.205	30.9493	49.776	35.0392	43.0369	41.3425	41.6942	41.0466	69.1743	62.3638	75.3661	82.9552	36.5166	36.5109	52.3603	52.4492	48.7389	43.1453	35.176	41.2269	42.0386	41.5072	73.8692	71.3257
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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