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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003658 ID=TCONS_00003658|Name=TCONS_00003658|organism=Clytia hemisphaerica|type=transcript|length=729bp
CGTCTTTGCACACGTGATCACACAGACGTACAATACCTTTCGTCCGGCAC
CGAAGATTTCTTCTTATCAGCTTTCTATTACAACAAAGGAGTTTACCACA
CTCAACATGCCGGTTTGACGTACTTTCAACATCCAGGAACGATGAGCGCT
TACAAGATTTTTGCATCCGATCCTCTGATTTTTAAAGATTCTTTTCACCT
TTTGTGGAGGCAATCTGagaaAAATGACAATGAATGTTACACGCGTACTG
GCGCTGAGGAATGCGAGTTTCTCCCTGACGGAACTGCTACCTTGCGTTCG
ACAAAACAACAAATTGATTTGAATGTTCACAAGAAATATCCAACGTTGAA
TGAGAAGCCAATGTTTGCTGTGACCAACATTTCCAGCTATGTCTGGTTTT
ATGAATGGTAAAGTCTTGGGCGAAATCctgtaatacaccttttcgaccgt
agccgccaattgccgagcgggcatttttttttcgctttatcccactaaaa
ccgtcccagtccttttttcgcacctatagacaatagaaaaatgtgtcaaa
aaaggattggatcgagtttaggggatgattaaataattaaatggcacgcg
cctgaccgcgcgattacggtcgaaaaggtgtattaagtCGTATTATGTCA
AGAGTTAGACAATCGCCTAATGTTTTATCATTTGACATTGGGTTTTCTTT
TCGTTTTCAGAAATAATTTTacataaatt Run BLAST on NCBI protein sequence of TCONS_00003658-protein >TCONS_00003658-protein ID=TCONS_00003658-protein|Name=TCONS_00003658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
RLCTRDHTDVQYLSSGTEDFFLSAFYYNKGVYHTQHAGLTYFQHPGTMSA
YKIFASDPLIFKDSFHLLWRQSEKNDNECYTRTGAEECEFLPDGTATLRS
TKQQIDLNVHKKYPTLNEKPMFAVTNISSYVWFYEW Run BLAST on NCBI transcript from alignment at sc0000030:590860..592409- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003658 ID=TCONS_00003658|Name=TCONS_00003658|organism=Clytia hemisphaerica|type=transcript|length=1550bp|location=Sequence derived from alignment at sc0000030:590860..592409- (Clytia hemisphaerica)
CGTCTTTGCACACGTGATCACACAGACGTACAATACCTTTCGTCCGGCAC
CGAAGATTTCTTCTTATCAGCTTTCTATTACAACAAAGGAGTTTACCACA
CTCAACATGCCGGTTTGACGTACTTTCAACATCCAGGAACGATGAGCGCT
TACAAGATTTTTGCATCCGATCCTCTGATTTTTAAAGATTCTTTTCACCT
TTTGTGGAGGCAATCTGAGGTATTTTTTTATTTGCTATCTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCCTTCGTTC
CTTCGTTCCTTCGTTCCTTCGTTCCTTCGTTCGTTCCTTCGTTCCTTCGT
TCGTTCCTTCGTTCCTTCGTTCGTTCGTTCGTTCGTTCCTTCGTTCCTTC
GTTCCTTCGTTTCTAGGATTTTAATTGTTTCCACGGGGTCCACGGCCGGC
TGGTTCGGATATACAGGAATTTTGGAAGGAGCGAGGATTCGAACCGATAC
CCTCTGGTTTCAGACGCCGACGTCTTGACTACTCGACCATTGATTTTATT
TTCATTTTTCAGAGAAGGTTGTTTAAAAGTGCTAATTAAAAGTGCTGTAC
CTTTAAAGCACGTAACAGGTTTTAACGCACGACTGTTCGTTGCAACTTTG
ATCCTCCATTTACGCCCAGAATGCAGTAACTAACCAGAACCTGCTAGTTT
ATACTAGACGTCACGGTTTTTATCTACGTAGGAACTATTCCACTTACTGA
CTTTTTCGAATGTTTCGAGCCCAGGTTTCGGCTCCAAACATTCGATTTTT
TAGACGCAACTTTAAACTTTTGAAGCTCTTCTCGTAGCAAAAGATTTTGA
ATTAGCGTCACTACACTTGAAAGGCTTCTATTTTTTGGAAAATCAATAAA
ATAAAACTCACAAATAAACGGAATGAAAAATGCCGGTTTTGGTGAGGTGC
TTGCCAAGAACCTGCAAAATTATTCATTTTTTTCTTCTAGAAAAATGACA
ATGAATGTTACACGCGTACTGGCGCTGAGGAATGCGAGTTTCTCCCTGAC
GGAACTGCTACCTTGCGTTCGACAAAACAACAAATTGATTTGAATGTTCA
CAAGAAATATCCAACGTTGAATGAGAAGCCAATGTTTGCTGTGACCAACA
TTTCCAGCTATGTCTGGTTTTATGAATGGTAAAGTCTTGGGCGAAATCCT
GTAATACACCTTTTCGACCGTAGCCGCCAATTGCCGAGCGGGCATTTTTT
TTTCGCTTTATCCCACTAAAACCGTCCCAGTCCTTTTTTCGCACCTATAG
ACAATAGAAAAATGTGTCAAAAAAGGATTGGATCGAGTTTAGGGGATGAT
TAAATAATTAAATGGCACGCGCCTGACCGCGCGATTACGGTCGAAAAGGT
GTATTAAGTCGTATTATGTCAAGAGTTAGACAATCGCCTAATGTTTTATC
ATTTGACATTGGGTTTTCTTTTCGTTTTCAGAAATAATTTTACATAAATT
Coding sequence (CDS) from alignment at sc0000030:590860..592409- >TCONS_00003658 ID=TCONS_00003658|Name=TCONS_00003658|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at sc0000030:590860..592409- (Clytia hemisphaerica)
AAAAATGACAATGAATGTTACACGCGTACTGGCGCTGAGGAATGCGAGTT
TCTCCCTGACGGAACTGCTACCTTGCGTTCGACAAAACAACAAATTGATT
TGAATGTTCACAAGAAATATCCAACGTTGAATGAGAAGCCAATGTTTGCT
GTGACCAACATTTCCAGCTATGTCTGGTTTTATGAATGGTAACGTCTTTG
CACACGTGATCACACAGACGTACAATACCTTTCGTCCGGCACCGAAGATT
TCTTCTTATCAGCTTTCTATTACAACAAAGGAGTTTACCACACTCAACAT
GCCGGTTTGACGTACTTTCAACATCCAGGAACGATGAGCGCTTACAAGAT
TTTTGCATCCGATCCTCTGATTTTTAAAGATTCTTTTCACCTTTTGTGGA
GGCAATCTGAGAAAAATGACAATGAATGTTACACGCGTACTGGCGCTGAG
GAATGCGAGTTTCTCCCTGACGGAACTGCTACCTTGCGTTCGACAAAACA
ACAAATTGATTTGAATGTTCACAAGAAATATCCAACGTTGAATGAGAAGC
CAATGTTTGCTGTGACCAACATTTCCAGCTATGTCTGGTTTTATGAATGG
TAACGTCTTTGCACACGTGATCACACAGACGTACAATACCTTTCGTCCGG
CACCGAAGATTTCTTCTTATCAGCTTTCTATTACAACAAAGGAGTTTACC
ACACTCAACATGCCGGTTTGACGTACTTTCAACATCCAGGAACGATGAGC
GCTTACAAGATTTTTGCATCCGATCCTCTGATTTTTAAAGATTCTTTTCA
CCTTTTGTGGAGGCAATCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003658-exon-sc0000030-1575043694:592191..592409 | TCONS_00003658-exon-sc0000030-1575043694:592191..592409 | Clytia hemisphaerica | exon |
| TCONS_00003658-exon-sc0000030-1575043694:590860..591369 | TCONS_00003658-exon-sc0000030-1575043694:590860..591369 | Clytia hemisphaerica | exon |
| TCONS_00003658-exon-sc0000030-1510915933:592191..592409 | TCONS_00003658-exon-sc0000030-1510915933:592191..592409 | Clytia hemisphaerica | exon |
| TCONS_00003658-exon-sc0000030-1510915933:590860..591369 | TCONS_00003658-exon-sc0000030-1510915933:590860..591369 | Clytia hemisphaerica | exon |
| TCONS_00003658-exon-sc0000030-1491911889:592191..592409 | TCONS_00003658-exon-sc0000030-1491911889:592191..592409 | Clytia hemisphaerica | exon |
| TCONS_00003658-exon-sc0000030-1491911889:590860..591369 | TCONS_00003658-exon-sc0000030-1491911889:590860..591369 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:590860..592409 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021345 | DUF2961 |
Blast
The following BLAST results are available for this feature:
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